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[179835_at]

Description F47B10.4 /REP_DB=WormBase Gene ID /WP=CE03354 /TR=Q20504 /GB=CAA91984.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 53      4grp_total > 0      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 99
1 2 3 4 range
A 28.3
(-0.9)
A 		4.3
(-3)
A 		72.1
(3)
A 		33
(-0.5)
A 		68
B 5.6
(-2.6)
A 		2.2
(-3)
A 		8.4
(-2.2)
A 		48
(3)
A 		46
C 1.8
(-3)
A 		2.6
(-2.9)
A 		1.7
(-3)
A 		100.6
(3)
P 		99
avr 11.9
(-2.1) 		3
(-3) 		27.4
(-0.5) 		60.5
(3) 		58

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 36
1 2 3 4 5 6 range
A 2.8
(-3)
A 		8.1
(-2.1)
A 		38.2
(3)
A 		5.2
(-2.6)
A 		24.9
(0.7)
A 		10.7
(-1.7)
A 		35
B 5.9
(-2.9)
A 		5.6
(-3)
A 		35.4
(3)
A 		14.4
(-1.2)
A 		16.5
(-0.8)
A 		19.8
(-0.1)
A 		30
C 20.4
(0.5)
A 		33.6
(3)
A 		2.1
(-2.9)
A 		10.4
(-1.4)
A 		1.8
(-3)
A 		11.1
(-1.2)
A 		32
avr 9.7
(-3) 		15.8
(-0.6) 		25.2
(3) 		10
(-2.9) 		14.4
(-1.2) 		13.9
(-1.4) 		16
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 18
1 2 3 4 range
A 10.3
(0.1)
A 		0.9
(-3)
A 		18.9
(3)
A 		4.8
(-1.7)
A 		18
B 1.8
(-2.2)
A 		0.5
(-3)
A 		1.9
(-2.1)
A 		10.2
(3)
A 		10
C 0.6
(-3)
A 		0.7
(-3)
A 		0.6
(-3)
A 		17
(3)
P 		16
avr 4.2
(-0.9) 		0.7
(-3) 		7.1
(0.8) 		10.7
(3) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 10
1 2 3 4 5 6 range
A 0.5
(-3)
A 		2.9
(-1.2)
A 		8.3
(3)
A 		1.3
(-2.4)
A 		7.5
(2.4)
A 		2.6
(-1.4)
A 		8
B 2.1
(-2.8)
A 		1.9
(-3)
A 		8.6
(3)
A 		3.8
(-1.3)
A 		6.7
(1.3)
A 		7.4
(1.9)
A 		7
C 7.5
(1.3)
A 		10.3
(3)
A 		0.5
(-3)
A 		2.1
(-2)
A 		0.6
(-2.9)
A 		3.7
(-1)
A 		10
avr 3.4
(-1.2) 		5
(1.6) 		5.8
(3) 		2.4
(-3) 		4.9
(1.4) 		4.6
(0.9) 		3
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179835_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16266
Sequence Type Exemplar sequence
Representative Public ID F47B10.4 NCBI
Target Description F47B10.4 /REP_DB=WormBase Gene ID /WP=CE03354 /TR=Q20504 /GB=CAA91984.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077417(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077417 NCBI Caenorhabditis elegans F47B10.4 (F47B10.4) mRNA, complete cds. 11/11 None
SNAP00000040444 ENSEMBL cdna:SNAP chromosome:CEL140:X:10891146:10891630:1 11/11 None
GENEFINDER00000040456 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:10891146:10891630:1 11/11 None
F47B10.4 ENSEMBL cdna:known chromosome:CEL140:X:10891218:10891630:1 gene:F47B10.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:10891217-10891630(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F47B10.4
Entrez Gene 185903 Entrez gene
SwissProt Q20504 EMBL-EBI
WormBase CE03354 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA91984 Hypothetical protein F47B10.4 [Caenorhabditis elegans] ref|NP_509818.1| F47B10.4 [Caenorhabditis elegans] 7.0E-46
Sequence
Target Sequence 
>C. ELEGANS:179835_AT
atgcagtctaaagtctctatccttatcgagcgcgtcaatgttatcgaggagcaacctgta
aagctccaggagttcgatgacgatgtctatccaggaattgtcatagccgttgaacaaacc
agcttctttgcgcgctgcaagaaggtaattgtcaacacagtcgtcagcatgacctgcggt
gtctccaacattccatacagtttctttgccagaaccaaccaaactgccgga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGCAGTCTAAAGTCTCTATCCTTA 689 41 13 Antisense
TCTATCCTTATCGAGCGCGTCAATG 649 613 28 Antisense
GAGCGCGTCAATGTTATCGAGGAGC 615 385 40 Antisense
AAGCTCCAGGAGTTCGATGACGATG 95 151 73 Antisense
GTTCGATGACGATGTCTATCCAGGA 569 441 84 Antisense
ATCCAGGAATTGTCATAGCCGTTGA 319 39 101 Antisense
AGCCGTTGAACAAACCAGCTTCTTT 225 83 117 Antisense
CAGCTTCTTTGCGCGCTGCAAGAAG 496 203 132 Antisense
AACACAGTCGTCAGCATGACCTGCG 484 135 166 Antisense
CATTCCATACAGTTTCTTTGCCAGA 546 217 201 Antisense
TGCCAGAACCAACCAAACTGCCGGA 99 585 219 Antisense
Sequence Source Affymetrix Proprietary Database