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[179833_at]

Description F07E5.2 /REP_DB=WormBase Gene ID /WP=CE09215 /TR=P91222 /GB=AAB37902.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 58      4grp_total > 33      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 34
1 2 3 4 range
A 12.8
(-2.3)
A 		9.6
(-3)
A 		31.1
(2)
A 		35.6
(3)
A 		26
B 4.6
(-3)
A 		38.1
(3)
A 		20
(-0.2)
A 		23.7
(0.4)
A 		34
C 4.9
(-3)
A 		34.2
(3)
A 		22.2
(0.5)
A 		30.4
(2.2)
A 		29
avr 7.4
(-3) 		27.3
(2.3) 		24.4
(1.5) 		29.9
(3) 		23

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 49
1 2 3 4 5 6 range
A 30.9
(3)
A 		1.5
(-3)
A 		16.6
(0.1)
A 		31
(3)
M 		9.1
(-1.5)
A 		25.7
(1.9)
A 		30
B 34.8
(2.1)
A 		2.2
(-2.8)
A 		1.2
(-3)
A 		27.2
(1)
A 		1.4
(-3)
A 		40.4
(3)
A 		39
C 30.6
(0.5)
A 		24.7
(-0.2)
A 		9.2
(-2.3)
A 		3.4
(-3)
A 		14.6
(-1.6)
A 		49.8
(3)
M 		46
avr 32.1
(1.7) 		9.5
(-2.8) 		9
(-2.9) 		20.5
(-0.6) 		8.4
(-3) 		38.6
(3) 		30
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 8
1 2 3 4 range
A 4.7
(-0.4)
A 		2.1
(-3)
A 		8.1
(3)
A 		5.2
(0.1)
A 		6
B 1.5
(-3)
A 		9.4
(3)
A 		4.6
(-0.6)
A 		5
(-0.3)
A 		8
C 1.6
(-3)
A 		9.8
(3)
A 		7.7
(1.5)
A 		5.1
(-0.4)
A 		8
avr 2.6
(-3) 		7.1
(3) 		6.8
(2.6) 		5.1
(0.3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 16
1 2 3 4 5 6 range
A 5.7
(1.2)
A 		0.5
(-3)
A 		3.6
(-0.5)
A 		7.9
(3)
M 		2.7
(-1.2)
A 		6.3
(1.7)
A 		7
B 12.1
(1.8)
A 		0.7
(-2.8)
A 		0.3
(-3)
A 		7.2
(-0.2)
A 		0.6
(-2.9)
A 		15.1
(3)
A 		15
C 11.3
(1)
A 		7.5
(-0.5)
A 		2.4
(-2.4)
A 		0.7
(-3)
A 		4.7
(-1.5)
A 		16.7
(3)
M 		16
avr 9.7
(1.3) 		2.9
(-2.5) 		2.1
(-3) 		5.3
(-1.2) 		2.7
(-2.7) 		12.7
(3) 		11
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179833_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5200
Sequence Type Exemplar sequence
Representative Public ID F07E5.2 NCBI
Target Description F07E5.2 /REP_DB=WormBase Gene ID /WP=CE09215 /TR=P91222 /GB=AAB37902.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061766(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061766 NCBI Caenorhabditis elegans F07E5.2 (F07E5.2) mRNA, complete cds. 11/11 None
SNAP00000023364 ENSEMBL cdna:SNAP chromosome:CEL140:II:2051756:2059155:1 9/11 None
F07E5.2 ENSEMBL cdna:known chromosome:CEL140:II:2051683:2052703:1 gene:F07E5.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:2051688-2052702(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F07E5.2
Entrez Gene 173563 Entrez gene
SwissProt P91222 EMBL-EBI
WormBase CE09215 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB37902 Hypothetical protein F07E5.2 [Caenorhabditis elegans] ref|NP_494167.1| F07E5.2 [Caenorhabditis elegans] 1.0E-180
blast AAB37902 Hypothetical protein F07E5.2 [Caenorhabditis elegans] ref|NP_494167.1| F07E5.2 [Caenorhabditis elegans] 1.0E-131
blast AAB37905 Hypothetical protein F07E5.6 [Caenorhabditis elegans] ref|NP_494169.1| F07E5.6 [Caenorhabditis elegans] 2.0E-86
blast AAB37905 Hypothetical protein F07E5.6 [Caenorhabditis elegans] ref|NP_494169.1| F07E5.6 [Caenorhabditis elegans] 1.0E-70
blast CAB60508 Hypothetical protein Y56A3A.14 [Caenorhabditis elegans] ref|NP_499546.1| Y56A3A.14 [Caenorhabditis elegans] 3.0E-37
blast AAC67486 Hypothetical protein F58E1.9 [Caenorhabditis elegans] ref|NP_494042.1| F58E1.9 [Caenorhabditis elegans] 6.0E-24
Protein Domains
Database ID Description E-Value
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 6.3E-8
Sequence
Target Sequence 
>C. ELEGANS:179833_AT
gagcacgttgctgaggtactctttcagaacaagggtgtaatattgagttgtgatgcacca
ttcagaacatatattaaagaacttctgaaaaacatcaatgtcacgttgattgcaatcagg
tcttctggatttgaagtttggaagttttttgaattattcccttcattggaaaaagtgaca
tttaccgaaggcccaattcccttatctgtcctctccaggaacttggacgggcttaaagtc
aatacaaaagacgtgccactagacgatgcattaacttcgaactcgttgtcttttgcaatg
caccgcaacagttttaccatgaaagaaatcaatttgtttataaaacaatggatcagagga
tgcaacccacgcctcgagatgttccaaatactttttaatgatatcgaacgccatttagtc
ttggagaatgtcattttcaaaggaatcaactacatcgaaaaacggaataggattgtacaa
tgtcaggagagagaagagtatcgaattgagagatttgatggaacagaagctcttgtatgg
tttaatccaaatagatttccatttctagagatgactgt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGCACGTTGCTGAGGTACTCTTTC 109 391 346 Antisense
GAGTTGTGATGCACCATTCAGAACA 602 397 390 Antisense
GATTGCAATCAGGTCTTCTGGATTT 163 435 453 Antisense
TATCTGTCCTCTCCAGGAACTTGGA 119 657 548 Antisense
AAGACGTGCCACTAGACGATGCATT 567 153 593 Antisense
GATGCATTAACTTCGAACTCGTTGT 289 413 610 Antisense
ACTCGTTGTCTTTTGCAATGCACCG 424 97 626 Antisense
CACCGCAACAGTTTTACCATGAAAG 301 199 646 Antisense
TGATATCGAACGCCATTTAGTCTTG 8 565 744 Antisense
CAGAAGCTCTTGTATGGTTTAATCC 191 205 869 Antisense
GATTTCCATTTCTAGAGATGACTGT 12 429 899 Antisense
Sequence Source Affymetrix Proprietary Database