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[179832_at]

Description T05C12.9 /REP_DB=WormBase Gene ID /WP=CE02321 /TR=Q22231 /GB=CAA91311.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 99      4grp_total > 11      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 93
1 2 3 4 range
A 25.3
(-1.8)
A 		6.2
(-3)
A 		19.6
(-2.1)
A 		99.5
(3)
P 		93
B 53.9
(0.4)
A 		69.4
(3)
A 		34
(-3)
A 		49.9
(-0.3)
A 		35
C 36.5
(-3)
A 		47.1
(2.2)
A 		48.7
(3)
A 		44.3
(0.8)
A 		12
avr 38.6
(-2.1) 		40.9
(-1.7) 		34.1
(-3) 		64.6
(3) 		31

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 70
1 2 3 4 5 6 range
A 46.9
(0.6)
A 		4.2
(-3)
A 		42.5
(0.3)
A 		34.6
(-0.4)
A 		74.6
(3)
P 		58.8
(1.7)
A 		70
B 17.7
(-1.9)
A 		6.7
(-3)
A 		29.9
(-0.7)
A 		44.8
(0.8)
A 		66.8
(3)
P 		45.3
(0.9)
A 		60
C 38.7
(-0.1)
A 		69.4
(3)
P 		34.9
(-0.5)
A 		9.5
(-3)
A 		39.5
(0)
A 		42.8
(0.3)
A 		60
avr 34.4
(-1.6) 		26.8
(-3) 		35.8
(-1.4) 		29.6
(-2.5) 		60.3
(3) 		49
(1) 		34
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 16
1 2 3 4 range
A 9.2
(0.6)
A 		1.3
(-3)
A 		5.1
(-1.3)
A 		14.6
(3)
P 		13
B 17.2
(3)
A 		17.1
(2.9)
A 		7.9
(-3)
A 		10.6
(-1.3)
A 		9
C 12.1
(-0.1)
A 		13.5
(0.8)
A 		17
(3)
A 		7.5
(-3)
A 		10
avr 12.8
(3) 		10.6
(-1.7) 		10
(-3) 		10.9
(-1.1) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 26
1 2 3 4 5 6 range
A 8.6
(-1)
A 		1.5
(-3)
A 		9.3
(-0.8)
A 		8.8
(-0.9)
A 		22.5
(3)
P 		14.3
(0.7)
A 		21
B 6.2
(-2)
A 		2.2
(-3)
A 		7.3
(-1.8)
A 		11.9
(-0.7)
A 		27.1
(3)
P 		16.9
(0.5)
A 		25
C 14.4
(0.9)
A 		21.2
(3)
P 		8.9
(-0.8)
A 		1.9
(-3)
A 		12.8
(0.4)
A 		14.3
(0.9)
A 		19
avr 9.7
(-2) 		8.3
(-2.6) 		8.5
(-2.5) 		7.5
(-3) 		20.8
(3) 		15.2
(0.5) 		13
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179832_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2774
Sequence Type Exemplar sequence
Representative Public ID T05C12.9 NCBI
Target Description T05C12.9 /REP_DB=WormBase Gene ID /WP=CE02321 /TR=Q22231 /GB=CAA91311.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063323(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063323 NCBI Caenorhabditis elegans T05C12.9 (T05C12.9) mRNA, complete cds. 11/11 None
SNAP00000002116 ENSEMBL cdna:SNAP chromosome:CEL140:II:8191976:8193071:-1 10/11 None
GENEFINDER00000002122 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:8191695:8193140:-1 11/11 None
T05C12.9 ENSEMBL cdna:known chromosome:CEL140:II:8192367:8193140:-1 gene:T05C12.9 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:8192363-8193137(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T05C12.9
Entrez Gene 188125 Entrez gene
SwissProt Q22231 EMBL-EBI
WormBase CE02321 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA91311 Hypothetical protein T05C12.9 [Caenorhabditis elegans] ref|NP_495724.1| T05C12.9 [Caenorhabditis elegans] 4.0E-90
blast CAA91311 Hypothetical protein T05C12.9 [Caenorhabditis elegans] ref|NP_495724.1| T05C12.9 [Caenorhabditis elegans] 4.0E-86
blast CAE57711 Hypothetical protein CBG00719 [Caenorhabditis briggsae] 3.0E-82
blast CAA91311 Hypothetical protein T05C12.9 [Caenorhabditis elegans] ref|NP_495724.1| T05C12.9 [Caenorhabditis elegans] 5.0E-73
blast CAE57711 Hypothetical protein CBG00719 [Caenorhabditis briggsae] 3.0E-45
blast CAE57711 Hypothetical protein CBG00719 [Caenorhabditis briggsae] 2.0E-40
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_495724.1 3 12-34,44-66,73-95
T05C12.9 3 12-34,44-66,73-95
SNAP00000002116 2 22-44,56-78
GENEFINDER00000002122 4 12-34,44-66,73-95,266-288
Sequence
Target Sequence 
>C. ELEGANS:179832_AT
gacactccaggaatgttctcatatttctacaaataatcagtgtaaccatgctatgtgcaa
tactttatcctgtttttaggactcggcttcttcttggttcaactcgtatacttgcaatcg
ctttaccattttcctctggtttcactgttttgtgctcattgttgagtaatgttatcatca
aaacaaaatatcgtcttgctatgactgtcacacttggaatatcagttatcagtttggtta
cagtaattggtttcaccattgcagtgtatcagtctattggaagtacgagtgaagaaagtt
ttcagcaggagtttttaaaggttttggagcaaaagtcggaaaagggaatgcggacgcttc
acaaatttcaaaaaataacagagtgctgtggagttccattgccgacaagtactggttgga
atcaatcttcaataactccatcaagcccttggacttcttggttttactacacgctt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GACACTCCAGGAATGTTCTCATATT 523 367 35 Antisense
GCTATGTGCAATACTTTATCCTGTT 307 303 84 Antisense
GCTTCTTCTTGGTTCAACTCGTATA 540 305 120 Antisense
TACTTGCAATCGCTTTACCATTTTC 517 643 143 Antisense
TACCATTTTCCTCTGGTTTCACTGT 663 649 158 Antisense
ATCGTCTTGCTATGACTGTCACACT 635 35 224 Antisense
GAATGCGGACGCTTCACAAATTTCA 154 331 380 Antisense
GGAGTTCCATTGCCGACAAGTACTG 533 515 424 Antisense
GAATCAATCTTCAATAACTCCATCA 521 327 453 Antisense
TAACTCCATCAAGCCCTTGGACTTC 118 639 467 Antisense
GACTTCTTGGTTTTACTACACGCTT 199 371 486 Antisense
Sequence Source Affymetrix Proprietary Database