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[179830_at]

Description F01D5.10 /REP_DB=WormBase Gene ID /WP=CE18567 /TR=Q9XVA5 /GB=CAB04045.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 43      4grp_high_8_8 > 54      6grp_total > 20      4grp_total > 57      6grp_high1_sub > 02      6grp_total_sub > Hat      6grp_rule_based > S2      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 682
1 2 3 4 range
A 130.6
(-3)
P 		626.4
(1.9)
P 		741.1
(3)
P 		134.2
(-3)
P 		611
B 115.1
(-3)
M 		645.9
(1.7)
P 		796.3
(3)
P 		114.7
(-3)
P 		682
C 136.2
(-3)
P 		699.4
(2.8)
P 		722.5
(3)
P 		177.4
(-2.6)
P 		586
avr 127.3
(-3) 		657.2
(2.1) 		753.3
(3) 		142.1
(-2.9) 		626

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 496
1 2 3 4 5 6 range
A 120.1
(-3)
A 		478.7
(3)
P 		348.2
(0.8)
P 		336.3
(0.6)
P 		205.5
(-1.6)
P 		145.7
(-2.6)
P 		359
B 149.5
(-3)
P 		561.5
(3)
P 		440
(1.2)
P 		267.1
(-1.3)
P 		212.7
(-2.1)
P 		153.5
(-2.9)
P 		412
C 131.3
(-3)
P 		615.6
(3)
P 		340.3
(-0.4)
P 		291.3
(-1)
P 		219
(-1.9)
P 		145.9
(-2.8)
P 		484
avr 133.6
(-3) 		551.9
(3) 		376.2
(0.5) 		298.2
(-0.6) 		212.4
(-1.9) 		148.4
(-2.8) 		418
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 232
1 2 3 4 range
A 47.6
(-2)
P 		136
(1)
P 		193.7
(3)
P 		19.6
(-3)
P 		174
B 36.7
(-2.5)
M 		159.5
(2.1)
P 		184.5
(3)
P 		24.4
(-3)
P 		160
C 45.1
(-2.6)
P 		201.1
(1.6)
P 		251.8
(3)
P 		29.9
(-3)
P 		222
avr 43.1
(-2.4) 		165.5
(1.6) 		210
(3) 		24.6
(-3) 		185

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 166
1 2 3 4 5 6 range
A 22.1
(-3)
A 		170.2
(3)
P 		75.8
(-0.8)
P 		85.3
(-0.4)
P 		62
(-1.4)
P 		35.5
(-2.5)
P 		148
B 52
(-3)
P 		186.9
(3)
P 		106.8
(-0.6)
P 		70.7
(-2.2)
P 		86.4
(-1.5)
P 		57.3
(-2.8)
P 		135
C 48.7
(-3)
P 		187.8
(3)
P 		86.6
(-1.4)
P 		58.6
(-2.6)
P 		70.9
(-2)
P 		48.9
(-3)
P 		139
avr 40.9
(-3) 		181.6
(3) 		89.7
(-0.9) 		71.5
(-1.7) 		73.1
(-1.6) 		47.2
(-2.7) 		141
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179830_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2775
Sequence Type Exemplar sequence
Representative Public ID F01D5.10 NCBI
Target Description F01D5.10 /REP_DB=WormBase Gene ID /WP=CE18567 /TR=Q9XVA5 /GB=CAB04045.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064539(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064539 NCBI Caenorhabditis elegans F01D5.10 (F01D5.10) mRNA, complete cds. 11/11 None
SNAP00000039845 ENSEMBL cdna:SNAP chromosome:CEL140:II:14013746:14020837:-1 10/11 None
GENEFINDER00000039846 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:14013746:14020850:-1 11/11 None
F01D5.10 ENSEMBL cdna:known chromosome:CEL140:II:14017857:14020837:-1 gene:F01D5.10 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:14017853-14020834(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F01D5.10
Entrez Gene 184059 Entrez gene
SwissProt Q9XVA5 EMBL-EBI
WormBase CE18567 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB04045 Hypothetical protein F01D5.10 [Caenorhabditis elegans] ref|NP_496940.1| F01D5.10 [Caenorhabditis elegans] 0.0
blast CAB04044 Hypothetical protein F01D5.9 [Caenorhabditis elegans] ref|NP_496939.2| CYtochrome P450 family member (cyp-37A1) [Caenorhabditis elegans] 0.0
blast CAE73389 Hypothetical protein CBG20829 [Caenorhabditis briggsae] 0.0
blast CAE73390 Hypothetical protein CBG20830 [Caenorhabditis briggsae] 1.0E-118
Protein Families
Method ID Description E-Value
p450 CP1B_RAT Animalia; CYP1B1; rat; CP1B_RAT; Rattus sp.; Q64678 1.0E-107
p450 CP11_CHACA Animalia; CYP1A; Chc; CP11_CHACA; Chaetodon capistratus; Q92039 1.0E-116
Protein Domains
Database ID Description E-Value
Pfam IPR007669 EMBL-EBI Protein of unknown function DUF595 2.0E-20
Pfam IPR001128 EMBL-EBI Cytochrome P450 1.5E-99
Pfam IPR007669 EMBL-EBI Protein of unknown function DUF595 2.0E-20
Pfam IPR001128 EMBL-EBI Cytochrome P450 1.9E-94
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_496940.1 1 50-67
F01D5.10 1 50-67
SNAP00000039845 1 50-67
GENEFINDER00000039846 3 55-72,372-394,406-428
Sequence
Target Sequence 
>C. ELEGANS:179830_AT
acaattcaacgctatacacttcggcgaataagacaatttctcaggatattggagaaactg
gattatgctccaaaatcgctgaattcaatatgaacgactggaagctgtgggataaaatta
atgacgattttcgaaggattgtatttattcagcatccgttggaacgatttgttaggtcat
ataagaagttgtgtaaaattgagcgaaaatgcttcaactgccaggacaatctcagttgct
tcatgcggaaattgttgaagcagcacgaaaaaacagcggaggggcttgcaggaccagtca
ggacgtttatcacaaatcatttcagccctcagacttggaattgccatttcaatcgggagt
ttcaaaagattcgtacagtgaagattggcgggaatcaaactgaacgggcggagttctccg
ataacctgaatgaaatccttggggagcagggagttgctcaagaggttcagcggattatta
aggaggaagttttgaaaattcccctggagctctcaccggacgaacgtgagctcgccgtag
ccataaaacgagatcatgacgatctttaccgactattccgttatctgt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACAATTCAACGCTATACACTTCGGC 254 115 431 Antisense
GCGAAAATGCTTCAACTGCCAGGAC 150 289 633 Antisense
GGACAATCTCAGTTGCTTCATGCGG 220 525 654 Antisense
GGCTTGCAGGACCAGTCAGGACGTT 604 535 713 Antisense
ATCACAAATCATTTCAGCCCTCAGA 627 27 739 Antisense
TCAGCCCTCAGACTTGGAATTGCCA 127 625 752 Antisense
AACTGAACGGGCGGAGTTCTCCGAT 95 137 828 Antisense
TTTGAAAATTCCCCTGGAGCTCTCA 342 667 921 Antisense
GAGCTCTCACCGGACGAACGTGAGC 607 387 937 Antisense
GTGAGCTCGCCGTAGCCATAAAACG 457 483 956 Antisense
CTTTACCGACTATTCCGTTATCTGT 473 221 994 Antisense
Sequence Source Affymetrix Proprietary Database