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[179829_at]

Description Y51A2B.5 /REP_DB=WormBase Gene ID /WP=CE16659 /TR=O45955 /GB=CAA16391.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 79      4grp_total > 11      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 27
1 2 3 4 range
A 3.2
(-3)
A 		9.2
(-1.6)
A 		3.4
(-3)
A 		29.2
(3)
A 		26
B 7.9
(3)
A 		3
(-3)
A 		5.5
(0.1)
A 		5.3
(-0.2)
A 		5
C 5.1
(-0.1)
A 		7.5
(2.8)
A 		2.7
(-3)
A 		7.7
(3)
A 		5
avr 5.4
(-2.1) 		6.6
(-1.4) 		3.9
(-3) 		14.1
(3) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 7
1 2 3 4 5 6 range
A 4.9
(1.1)
A 		5.7
(3)
A 		3.2
(-3)
A 		4.3
(-0.4)
A 		4
(-1.1)
A 		3.3
(-2.8)
A 		3
B 4.1
(-0.1)
A 		4.6
(0.5)
A 		1.6
(-3)
A 		5.7
(1.7)
A 		6.8
(3)
A 		5.3
(1.3)
A 		5
C 3.7
(-1.9)
A 		4.7
(-0.9)
A 		3.3
(-2.3)
A 		2.6
(-3)
A 		4.5
(-1.1)
A 		8.5
(3)
A 		6
avr 4.2
(0) 		5
(1.6) 		2.7
(-3) 		4.2
(0) 		5.1
(1.8) 		5.7
(3) 		3
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 4
1 2 3 4 range
A 1.2
(-2.5)
A 		2
(-1.1)
A 		0.9
(-3)
A 		4.3
(3)
A 		3
B 2.5
(3)
A 		0.7
(-3)
A 		1.3
(-1)
A 		1.1
(-1.7)
A 		2
C 1.7
(0.5)
A 		2.2
(3)
A 		1
(-3)
A 		1.3
(-1.5)
A 		1
avr 1.8
(0.8) 		1.6
(-0.3) 		1.1
(-3) 		2.2
(3) 		1

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2
1 2 3 4 5 6 range
A 0.9
(-2.1)
A 		2
(3)
A 		0.7
(-3)
A 		1.1
(-1.2)
A 		1.2
(-0.7)
A 		0.8
(-2.5)
A 		1
B 1.4
(-0.4)
A 		1.5
(-0.1)
A 		0.4
(-3)
A 		1.5
(-0.1)
A 		2.7
(3)
A 		2
(1.2)
A 		2
C 1.4
(-0.7)
A 		1.4
(-0.7)
A 		0.8
(-2.2)
A 		0.5
(-3)
A 		1.5
(-0.4)
A 		2.8
(3)
A 		2
avr 1.2
(-0.2) 		1.6
(1.6) 		0.6
(-3) 		1
(-1.2) 		1.8
(2.5) 		1.9
(3) 		1
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179829_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13702
Sequence Type Exemplar sequence
Representative Public ID Y51A2B.5 NCBI
Target Description Y51A2B.5 /REP_DB=WormBase Gene ID /WP=CE16659 /TR=O45955 /GB=CAA16391.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075196
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
GENEFINDER00000034652 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:18391854:18393851:1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_075196 8/11 Cross Hyb Matching Probes None
SNAP00000034641 8/11 Cross Hyb Matching Probes None
SNAP00000034644 1/11 Cross Hyb Matching Probes None
GENEFINDER00000034649 1/11 Cross Hyb Matching Probes None
Y51A2B.5 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:18391853-18393851(+) 100.0 100.0
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA16391 Hypothetical protein Y51A2B.5 [Caenorhabditis elegans] ref|NP_507597.2| Y51A2B.5 [Caenorhabditis elegans] 4.0E-95
Sequence
Target Sequence 
>C. ELEGANS:179829_AT
gcttgcgtcaaggatttgcggcttcaaatggaattcctgacatgtggaagttgcattctg
cgactagtttgagcaaagttacaagggttcaaagatcagcgggcgaccgcgacgagacac
gcgacgctctgcaatttttaaatttttttttcaaatttccagtggaatccgaggaaatga
taaaaatcgcaaaaaccttcagcacggactgctccatccacaaacccggcaaaaactacc
gctatttctacttccatggaaacgatcaagctggaaaattcgagggctcactgatcgcgt
tcatcaaccaaaatgagcacacaaatattcgacttgttaaccaatttttcgggagttaca
tgcgaaaaactgcattttttatggatttccttgagccgacgcagaagaaaatcggatgcg
ttcctatgaattgcaagttgactgatgtctcgaaacaattcactcctgaatataagatat
tgtgtgttctcggtgacagccaaccatcaatgcctctgccactcccaaaatccgacaaaa
agcccggcaccgaatgcggat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCTTGCGTCAAGGATTTGCGGCTTC 378 307 83 Antisense
GTTGCATTCTGCGACTAGTTTGAGC 563 439 132 Antisense
AAAGATCAGCGGGCGACCGCGACGA 659 113 173 Antisense
ACACGCGACGCTCTGCAATTTTTAA 119 109 199 Antisense
GCAAAAACCTTCAGCACGGACTGCT 177 319 271 Antisense
TCCATCCACAAACCCGGCAAAAACT 471 587 295 Antisense
GCAAAAACTACCGCTATTTCTACTT 374 311 311 Antisense
AAATTCGAGGGCTCACTGATCGCGT 179 115 358 Antisense
TTATGGATTTCCTTGAGCCGACGCA 559 681 461 Antisense
TGTGTTCTCGGTGACAGCCAACCAT 706 551 565 Antisense
AAAAAGCCCGGCACCGAATGCGGAT 396 71 619 Antisense
Sequence Source Affymetrix Proprietary Database