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[179828_at]

Description Y41E3.14 /REP_DB=WormBase Gene ID /WP=CE18382 /TR=Q9NAI0 /GB=CAB76730.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 55      4grp_total > 11      6grp_cgc > 46      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 66
1 2 3 4 range
A 23.9
(-2)
A 		39.9
(-0.5)
A 		13
(-3)
A 		76.9
(3)
M 		64
B 34.4
(-1.9)
A 		25.5
(-3)
A 		26.6
(-2.9)
A 		76
(3)
P 		51
C 26.2
(-2.4)
A 		32.4
(-1.8)
A 		20.9
(-3)
A 		78.7
(3)
M 		58
avr 28.2
(-2.2) 		32.6
(-1.7) 		20.2
(-3) 		77.2
(3) 		57

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 54
1 2 3 4 5 6 range
A 42.9
(3)
A 		8.2
(-2.8)
A 		40.2
(2.6)
A 		6.9
(-3)
A 		29.7
(0.8)
A 		22.8
(-0.4)
P 		36
B 50
(2.7)
A 		28.4
(0)
A 		52.2
(3)
A 		3.9
(-3)
A 		14.8
(-1.6)
A 		47.3
(2.4)
P 		48
C 4.4
(-3)
A 		48.6
(1.9)
A 		27.3
(-0.5)
A 		58.3
(3)
A 		8.3
(-2.6)
A 		50.5
(2.1)
P 		54
avr 32.4
(0.9) 		28.4
(-0.1) 		39.9
(2.9) 		23
(-1.6) 		17.6
(-3) 		40.2
(3) 		23
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13
1 2 3 4 range
A 8.7
(1)
A 		8.7
(1)
A 		3.4
(-3)
A 		11.3
(3)
M 		8
B 11
(-0.1)
A 		6.3
(-2.9)
A 		6.2
(-3)
A 		16.2
(3)
P 		10
C 8.7
(-1.6)
A 		9.3
(-1)
A 		7.3
(-3)
A 		13.3
(3)
M 		6
avr 9.5
(-0.1) 		8.1
(-1.1) 		5.6
(-3) 		13.6
(3) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 17
1 2 3 4 5 6 range
A 7.9
(2.1)
A 		2.9
(-2)
A 		8.8
(2.8)
A 		1.7
(-3)
A 		9
(3)
A 		5.6
(0.2)
P 		7
B 17.4
(2.9)
A 		9.5
(0.1)
A 		12.7
(1.2)
A 		1
(-3)
A 		6
(-1.2)
A 		17.6
(3)
P 		17
C 1.6
(-3)
A 		14.8
(2.2)
A 		7
(-0.9)
A 		11.7
(1)
A 		2.7
(-2.6)
A 		16.9
(3)
P 		15
avr 9
(-0.1) 		9.1
(-0) 		9.5
(0.3) 		4.8
(-3) 		5.9
(-2.2) 		13.4
(3) 		9
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179828_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9944
Sequence Type Exemplar sequence
Representative Public ID Y41E3.14 NCBI
Target Description Y41E3.14 /REP_DB=WormBase Gene ID /WP=CE18382 /TR=Q9NAI0 /GB=CAB76730.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070421(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070421 NCBI Caenorhabditis elegans Serpentine Receptor, class T family member (srt-49) (srt-49) mRNA, complete cds. 11/11 None
GENEFINDER00000001464 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:15091018:15098344:-1 11/11 None
Y41E3.14 ENSEMBL cdna:known chromosome:CEL140:IV:15092843:15098338:-1 gene:Y41E3.14 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:15092840-15098344(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol srt-49
Ensembl Y41E3.14
Entrez Gene 189834 Entrez gene
SwissProt Q9NAI0 EMBL-EBI
WormBase CE35660 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB76730 Hypothetical protein Y41E3.14 [Caenorhabditis elegans] ref|NP_502822.2| Serpentine Receptor, class T family member (srt-49) [Caenorhabditis elegans] 0.0
blast CAB76730 Hypothetical protein Y41E3.14 [Caenorhabditis elegans] ref|NP_502822.2| Serpentine Receptor, class T family member (srt-49) [Caenorhabditis elegans] 1.0E-114
blast CAE68175 Hypothetical protein CBG13834 [Caenorhabditis briggsae] 1.0E-104
blast CAB63362 Hypothetical protein Y41E3.12 [Caenorhabditis elegans] ref|NP_502819.2| Serpentine Receptor, class T family member (srt-47) [Caenorhabditis elegans] 1.0E-100
blast CAE68175 Hypothetical protein CBG13834 [Caenorhabditis briggsae] 2.0E-65
blast CAE68187 Hypothetical protein CBG13847 [Caenorhabditis briggsae] 2.0E-63
Protein Domains
Database ID Description E-Value
Pfam IPR002651 EMBL-EBI Protein of unknown function DUF32 7.8E-82
Pfam IPR002651 EMBL-EBI Protein of unknown function DUF32 5.7E-16
Pfam IPR002651 EMBL-EBI Protein of unknown function DUF32 7.4E-35
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_502822.2 7 37-59,71-93,108-130,149-171,204-226,239-258,268-290
Y41E3.14 7 37-59,71-93,108-130,149-171,204-226,239-258,268-290
GENEFINDER00000001464 5 39-61,73-95,142-164,177-196,206-228
Sequence
Target Sequence 
>C. ELEGANS:179828_AT
atctgttcgtggcaatcatgttcttcttgtacatcacctattgtgtgctcatcaagaaac
ttgctcatggacagaaatcaaagaaatctagagcgatcttcatccaatgttgcataattt
gctttttcaacactgcaactgctcttatatataatgctctgtcacttatgacccccgccc
tttggatactgtacttgggacaattgtcatggtcacttaatcatggatgtccagcaatta
tttatttaaccatgaacgacacgattcggaagaacttttttcgaactttctgccgtttca
agaatactgtaagtttactgagaaacaaaggtatcgttaatagaatagagtttgcagaag
atcgatacaacgaacagcggacaagtggcacggcc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATCTGTTCGTGGCAATCATGTTCTT 682 33 992 Antisense
ATCATGTTCTTCTTGTACATCACCT 598 29 1006 Antisense
GTACATCACCTATTGTGTGCTCATC 208 461 1020 Antisense
GAAACTTGCTCATGGACAGAAATCA 162 357 1047 Antisense
GAGCGATCTTCATCCAATGTTGCAT 343 387 1082 Antisense
CTTTTTCAACACTGCAACTGCTCTT 94 223 1113 Antisense
ATAATGCTCTGTCACTTATGACCCC 441 25 1142 Antisense
CCGCCCTTTGGATACTGTACTTGGG 341 261 1166 Antisense
GGGACAATTGTCATGGTCACTTAAT 149 495 1188 Antisense
TTTTCGAACTTTCTGCCGTTTCAAG 621 673 1269 Antisense
CGAACAGCGGACAAGTGGCACGGCC 263 253 1362 Antisense
Sequence Source Affymetrix Proprietary Database