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[179824_at]

Description Y47D3B.4 /REP_DB=WormBase Gene ID /WP=CE19177 /TR=Q9XX05 /GB=CAA21037.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 50      4grp_total > 52      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 82
1 2 3 4 range
A 45.9
(-1.1)
A 		94.1
(3)
A 		24.4
(-3)
A 		58.3
(-0.1)
A 		70
B 85.7
(2.3)
A 		90.5
(3)
A 		81
(1.5)
A 		51.5
(-3)
A 		39
C 93
(3)
A 		55.5
(0.2)
A 		71.9
(1.4)
A 		12.6
(-3)
A 		80
avr 74.9
(2.2) 		80
(3) 		59.1
(-0.2) 		40.8
(-3) 		39

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 95
1 2 3 4 5 6 range
A 101.9
(2.3)
A 		52.7
(-2.5)
A 		106.9
(2.8)
A 		109
(3)
A 		65.7
(-1.2)
A 		47.2
(-3)
A 		62
B 84.7
(-0.3)
A 		69.6
(-1.4)
A 		131.8
(3)
A 		89.3
(-0)
P 		56.3
(-2.3)
A 		46.8
(-3)
A 		85
C 79.4
(-0.7)
A 		71.5
(-1.2)
A 		83.1
(-0.4)
A 		137.5
(3)
A 		42.2
(-3)
A 		85.8
(-0.3)
A 		95
avr 88.7
(0.6) 		64.6
(-2) 		107.3
(2.5) 		111.9
(3) 		54.7
(-3) 		59.9
(-2.5) 		57
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 29
1 2 3 4 range
A 16.7
(1.4)
A 		20.4
(3)
A 		6.4
(-3)
A 		8.5
(-2.1)
A 		14
B 27.3
(3)
A 		22.4
(1.2)
A 		18.8
(-0.1)
A 		11
(-3)
A 		16
C 30.8
(3)
A 		16
(-0.1)
A 		25.1
(1.8)
A 		2.1
(-3)
A 		29
avr 24.9
(3) 		19.6
(1.2) 		16.8
(0.3) 		7.2
(-3) 		18

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 21
1 2 3 4 5 6 range
A 18.8
(-0.3)
A 		18.7
(-0.3)
A 		23.3
(1.4)
A 		27.7
(3)
A 		19.8
(0.1)
A 		11.5
(-3)
A 		16
B 29.5
(2)
A 		23.2
(-0.6)
A 		32
(3)
A 		23.7
(-0.4)
P 		22.9
(-0.7)
A 		17.4
(-3)
A 		15
C 29.4
(3)
A 		21.8
(0.1)
A 		21.2
(-0.1)
A 		27.6
(2.3)
A 		13.7
(-3)
A 		28.7
(2.7)
A 		16
avr 25.9
(2.7) 		21.2
(-1.1) 		25.5
(2.4) 		26.3
(3) 		18.8
(-3) 		19.2
(-2.7) 		8
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179824_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7523
Sequence Type Exemplar sequence
Representative Public ID Y47D3B.4 NCBI
Target Description Y47D3B.4 /REP_DB=WormBase Gene ID /WP=CE19177 /TR=Q9XX05 /GB=CAA21037.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067068(9)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067068 NCBI Caenorhabditis elegans Y47D3B.4 (Y47D3B.4) mRNA, complete cds. 9/11 None
GENEFINDER00000004526 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:11396192:11408189:1 9/11 None
Y47D3B.4 ENSEMBL cdna:known chromosome:CEL140:III:11405269:11409301:1 gene:Y47D3B.4 9/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:11406560-11408185(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y47D3B.4
Entrez Gene 3565656 Entrez gene
SwissProt Q9XX05 EMBL-EBI
WormBase CE37289 Wormbase
Functional Annotations
Ortholog
ID Title Organism
DROSOPHILA_2:1625537_AT dm
DROSGENOME1:144365_AT dm
Protein Similarities
Method ID Description E-Value
blast CAA21037 Hypothetical protein Y47D3B.4 [Caenorhabditis elegans] ref|NP_499469.2| Y47D3B.4 [Caenorhabditis elegans] 0.0
blast CAA21038 Hypothetical protein Y47D3B.3 [Caenorhabditis elegans] ref|NP_499468.2| Y47D3B.3 [Caenorhabditis elegans] 0.0
blast CAE67714 Hypothetical protein CBG13288 [Caenorhabditis briggsae] 1.0E-141
blast CAA21037 Hypothetical protein Y47D3B.4 [Caenorhabditis elegans] ref|NP_499469.2| Y47D3B.4 [Caenorhabditis elegans] 3.0E-90
blast CAE67713 Hypothetical protein CBG13287 [Caenorhabditis briggsae] 1.0E-72
blast XP_397062 PREDICTED: similar to GA17592-PA [Apis mellifera] 3.0E-42
Protein Domains
Database ID Description E-Value
Pfam IPR008166 EMBL-EBI Protein of unknown function DUF23 7.6E-11
Pfam IPR008166 EMBL-EBI Protein of unknown function DUF23 3.6E-8
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_499469.2 1 5-24
Y47D3B.4 1 5-24
GENEFINDER00000004526 3 51-73,105-122,473-495
Sequence
Target Sequence 
>C. ELEGANS:179824_AT
atcttgccttccagctacttgaagacatttctggccgactcctggaatggattgaaatgc
agtacctatttggagcagattctgtgtcaatataccatttctaccttacaaatcaaactc
ataaagtgttagactattatgaaaagcacacaaatctcaaagtaatccccctctccttgc
catctggaaatccaaatagtccaatagagcggagcaagtacctgaaagagaaccgacctc
agaaacgtcgtcatgaacttcttccttacaatgactgtttctacaattatattcatacac
atcgatacgtattgattattgatattgatgaagtgatagtaccaattcagtttgataatt
atggcgatctacttcgagattttgaagccaaatcatttggatatcgtttgagctcaatat
ctagtcgaaatgttttcaaatttccatcaaattttacaatatttccacgtcatca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATCTTGCCTTCCAGCTACTTGAAGA 43 31 29 Antisense
TACTTGAAGACATTTCTGGCCGACT 426 645 44 Antisense
TCTGGCCGACTCCTGGAATGGATTG 417 607 58 Antisense
GTCAATATACCATTTCTACCTTACA 418 463 114 Antisense
ACAAATCTCAAAGTAATCCCCCTCT 512 109 178 Antisense
CTCTCCTTGCCATCTGGAAATCCAA 456 231 199 Antisense
GAACCGACCTCAGAAACGTCGTCAT 161 347 258 Antisense
TCGTCATGAACTTCTTCCTTACAAT 203 605 276 Antisense
ATGGCGATCTACTTCGAGATTTTGA 592 51 389 Antisense
GTTTGAGCTCAATATCTAGTCGAAA 315 449 434 Antisense
ATTTTACAATATTTCCACGTCATCA 242 15 479 Antisense
Sequence Source Affymetrix Proprietary Database