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[179822_at]

Description W04E12.5 /REP_DB=WormBase Gene ID /WP=CE19000 /TR=Q9XUL1 /GB=CAB04915.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 78      4grp_total > 50      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 54
1 2 3 4 range
A 30.3
(1.5)
A 		38
(3)
A 		31.2
(1.7)
A 		7.3
(-3)
A 		31
B 20.4
(-3)
A 		60.8
(3)
A 		35.4
(-0.8)
A 		26.4
(-2.1)
A 		40
C 8.6
(-2.9)
A 		19.2
(0.3)
A 		28.1
(3)
A 		8.4
(-3)
A 		20
avr 19.8
(-1.6) 		39.3
(3) 		31.6
(1.2) 		14
(-3) 		25

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 48
1 2 3 4 5 6 range
A 11.3
(-3)
A 		21.7
(-1.3)
A 		43.9
(2.3)
A 		22.7
(-1.1)
A 		48
(3)
A 		48
(3)
A 		37
B 21.4
(-1.1)
A 		20.5
(-1.2)
A 		18
(-1.5)
A 		7.1
(-3)
A 		21.8
(-1)
A 		52.1
(3)
A 		45
C 37.5
(0.8)
A 		25
(-0.9)
A 		9
(-3)
A 		26.8
(-0.7)
A 		28.6
(-0.4)
A 		54.6
(3)
M 		46
avr 23.4
(-2.2) 		22.4
(-2.4) 		23.6
(-2.1) 		18.9
(-3) 		32.8
(-0.4) 		51.6
(3) 		33
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 14
1 2 3 4 range
A 11
(3)
A 		8.2
(1.3)
A 		8.2
(1.3)
A 		1.1
(-3)
A 		10
B 6.5
(-2.4)
A 		15
(3)
A 		8.2
(-1.3)
A 		5.6
(-3)
A 		9
C 2.8
(-2)
A 		5.5
(-0.1)
A 		9.8
(3)
A 		1.4
(-3)
A 		8
avr 6.8
(0.6) 		9.6
(3) 		8.7
(2.2) 		2.7
(-3) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 18
1 2 3 4 5 6 range
A 2.1
(-3)
A 		7.7
(-0.3)
A 		9.6
(0.6)
A 		5.8
(-1.2)
A 		14.5
(3)
A 		11.7
(1.6)
A 		12
B 7.5
(-1.1)
A 		6.8
(-1.3)
A 		4.4
(-2.1)
A 		1.9
(-3)
A 		8.9
(-0.6)
A 		19.4
(3)
A 		18
C 13.9
(1.4)
A 		7.6
(-1)
A 		2.3
(-3)
A 		5.4
(-1.8)
A 		9.2
(-0.4)
A 		18.3
(3)
M 		16
avr 7.8
(-1.3) 		7.4
(-1.5) 		5.4
(-2.5) 		4.4
(-3) 		10.9
(0.2) 		16.5
(3) 		12
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179822_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14203
Sequence Type Exemplar sequence
Representative Public ID W04E12.5 NCBI
Target Description W04E12.5 /REP_DB=WormBase Gene ID /WP=CE19000 /TR=Q9XUL1 /GB=CAB04915.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075427(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075427 NCBI Caenorhabditis elegans W04E12.5 (W04E12.5) mRNA, complete cds. 10/11 None
GENEFINDER00000038170 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:19744075:19746497:1 10/11 None
W04E12.5 ENSEMBL cdna:known chromosome:CEL140:V:19744150:19746497:1 gene:W04E12.5 10/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000038161 1/11 Cross Hyb Matching Probes None
SNAP00000038164 5/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:19744680-19746497(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl W04E12.5
Entrez Gene 189192 Entrez gene
SwissProt Q9XUL1 EMBL-EBI
WormBase CE34101 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB04915 Hypothetical protein W04E12.5 [Caenorhabditis elegans] ref|NP_507828.2| W04E12.5 [Caenorhabditis elegans] 1.0E-96
blast CAB04915 Hypothetical protein W04E12.5 [Caenorhabditis elegans] ref|NP_507828.2| W04E12.5 [Caenorhabditis elegans] 3.0E-76
blast CAB03879 Hypothetical protein C14A6.5 [Caenorhabditis elegans] ref|NP_507548.1| C14A6.5 [Caenorhabditis elegans] 7.0E-35
blast CAB03879 Hypothetical protein C14A6.5 [Caenorhabditis elegans] ref|NP_507548.1| C14A6.5 [Caenorhabditis elegans] 6.0E-34
blast CAB03884 Hypothetical protein C14A6.7 [Caenorhabditis elegans] ref|NP_507550.1| C14A6.7 [Caenorhabditis elegans] 2.0E-11
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_507828.2 1 197-219
W04E12.5 1 197-219
GENEFINDER00000038170 1 198-220
Sequence
Target Sequence 
>C. ELEGANS:179822_AT
tttcaatatttttcaggcggcacaagaacaaacgggcccggatgagatattcccatttgc
tccgggaaccatgtttatggctaaaacaacagatgatctaaaattgattcttgaaatgct
gggaatggatgaagaaacgaagaattttattcttaaagatagagaggatgaactggaaaa
ggaaaatcgcgaggagctcctgagaagtgcaccgaacaacaacagaaacgccgagtatct
taccacctctgagcctgaaactgatgatgataccgacttggaactcgaaagtaagcctgt
cgagccagcagtggaggccgccaaacaccgcaccgacgtggaacctgaaatccttggatc
cgccaagatggatgacgtcgccacctctgcatcaatgacgtcacttgtctggaagtttgc
aatcctgatttttatcccaacattccttgcgattctcctgtattttgtgccatttg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTTCAATATTTTTCAGGCGGCACAA 484 671 102 Antisense
GCACAAGAACAAACGGGCCCGGATG 103 313 121 Antisense
GATGAGATATTCCCATTTGCTCCGG 204 411 142 Antisense
TTTGCTCCGGGAACCATGTTTATGG 475 667 157 Antisense
GAGGAGCTCCTGAGAAGTGCACCGA 202 405 292 Antisense
CTGTCGAGCCAGCAGTGGAGGCCGC 378 239 398 Antisense
ACCGCACCGACGTGGAACCTGAAAT 704 89 428 Antisense
CCAAGATGGATGACGTCGCCACCTC 210 277 464 Antisense
TGCAATCCTGATTTTTATCCCAACA 644 575 519 Antisense
TTTATCCCAACATTCCTTGCGATTC 174 675 532 Antisense
ATTCTCCTGTATTTTGTGCCATTTG 255 11 553 Antisense
Sequence Source Affymetrix Proprietary Database