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[179821_at] 7TM chemoreceptor, srt family

Description F54E2.6 /REP_DB=WormBase Gene ID /WP=CE17110 /TR=Q9TXJ9 /GB=AAC78202.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 80      4grp_total > 0      6grp_cgc > 95      6grp_cgc_sub > 04      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 64
1 2 3 4 range
A 2.3
(-3)
A 		5.4
(-2.7)
A 		4.9
(-2.8)
A 		65.9
(3)
A 		64
B 19.2
(0.3)
A 		3
(-3)
A 		25.2
(1.5)
A 		32.5
(3)
A 		30
C 5.3
(-0.9)
A 		3.5
(-2.2)
A 		2.5
(-3)
A 		10.4
(3)
A 		8
avr 8.9
(-2.1) 		4
(-3) 		10.9
(-1.7) 		36.3
(3) 		32

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 29
1 2 3 4 5 6 range
A 8.3
(-0.8)
A 		3.2
(-2.6)
A 		5.7
(-1.7)
A 		18.9
(3)
A 		4
(-2.3)
A 		2
(-3)
A 		17
B 2.4
(-2.3)
A 		9.3
(3)
A 		1.5
(-3)
A 		4
(-1.1)
A 		2.7
(-2.1)
A 		3
(-1.8)
A 		8
C 4.6
(-2.2)
A 		14.4
(-0.2)
A 		1.8
(-2.8)
A 		29.5
(3)
A 		1.3
(-2.9)
A 		1
(-3)
A 		29
avr 5.1
(-1.8) 		9
(-0.3) 		3
(-2.6) 		17.5
(3) 		2.7
(-2.7) 		2
(-3) 		16
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 9
1 2 3 4 range
A 0.8
(-3)
A 		1.2
(-2.7)
A 		1.3
(-2.7)
A 		9.6
(3)
A 		9
B 6.1
(2.2)
A 		0.7
(-3)
A 		5.8
(1.9)
A 		6.9
(3)
A 		6
C 1.7
(2.3)
A 		1
(-2.3)
A 		0.9
(-3)
A 		1.8
(3)
A 		1
avr 2.9
(-0.8) 		1
(-3) 		2.7
(-1) 		6.1
(3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 6
1 2 3 4 5 6 range
A 1.5
(-1.6)
A 		1.1
(-2.2)
A 		1.2
(-2)
A 		4.8
(3)
A 		1.2
(-2)
A 		0.5
(-3)
A 		4
B 0.8
(-2.1)
A 		3.1
(3)
A 		0.4
(-3)
A 		1.1
(-1.4)
A 		1.1
(-1.4)
A 		1.1
(-1.4)
A 		3
C 1.7
(-1.6)
A 		4.4
(1.4)
A 		0.5
(-2.9)
A 		5.9
(3)
A 		0.4
(-3)
A 		0.4
(-3)
A 		6
avr 1.3
(-1.9) 		2.9
(1.1) 		0.7
(-3) 		3.9
(3) 		0.9
(-2.6) 		0.7
(-3) 		3
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179821_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15732
Sequence Type Exemplar sequence
Representative Public ID F54E2.6 NCBI
Target Description F54E2.6 /REP_DB=WormBase Gene ID /WP=CE17110 /TR=Q9TXJ9 /GB=AAC78202.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071362(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071362 NCBI Caenorhabditis elegans Serpentine Receptor, class T family member (srt-34) (srt-34) mRNA, complete cds. 11/11 None
GENEFINDER00000004058 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:2812358:2818044:-1 11/11 None
F54E2.6 ENSEMBL cdna:known chromosome:CEL140:V:2816710:2818044:-1 gene:F54E2.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:2816709-2818044(-) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, srt family
Gene Symbol srt-34
Ensembl F54E2.6
Entrez Gene 186245 Entrez gene
SwissProt Q9TXJ9 EMBL-EBI
WormBase CE17110 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC78201 Hypothetical protein F54E2.5 [Caenorhabditis elegans] ref|NP_503762.1| F54E2.5 [Caenorhabditis elegans] 0.0
blast AAC78202 Serpentine receptor, class t protein 34 [Caenorhabditis elegans] ref|NP_503763.1| Serpentine Receptor, class T family member (srt-34) [Caenorhabditis elegans] 1.0E-173
blast AAC78202 Serpentine receptor, class t protein 34 [Caenorhabditis elegans] ref|NP_503763.1| Serpentine Receptor, class T family member (srt-34) [Caenorhabditis elegans] 1.0E-163
blast CAB01181 Hypothetical protein F40G12.8 [Caenorhabditis elegans] ref|NP_506535.2| Serpentine Receptor, class T family member (srt-33) [Caenorhabditis elegans] 1.0E-152
blast CAB01181 Hypothetical protein F40G12.8 [Caenorhabditis elegans] ref|NP_506535.2| Serpentine Receptor, class T family member (srt-33) [Caenorhabditis elegans] 1.0E-151
blast CAI46604 Hypothetical protein F40G12.15 [Caenorhabditis elegans] ref|NP_001023908.1| F40G12.15 [Caenorhabditis elegans] 1.0E-135
Protein Domains
Database ID Description E-Value
Pfam IPR002651 EMBL-EBI Protein of unknown function DUF32 1.5E-116
Pfam IPR006874 EMBL-EBI Protein of unknown function DUF621 2.0E-89
Pfam IPR006874 EMBL-EBI Protein of unknown function DUF621 2.2E-102
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_503763.1 7 40-62,75-97,112-134,155-177,203-225,246-265,275-297
F54E2.6 7 40-62,75-97,112-134,155-177,203-225,246-265,275-297
GENEFINDER00000004058 23 40-62,75-97,112-134,155-177,203-225,246-265,275-297,320-342,388-410,417-439,459-481,501-523,564-586,599-621,636-655,706-723,743-774,781-803,833-855,862-884,927-949,962-984,999-1018
Sequence
Target Sequence 
>C. ELEGANS:179821_AT
tggtattgctcatgtctcacgacaattctgttggttgcaaataggtcgttagatttaaca
tttcctgacaatgggcatgtgcttttcgatgataaacgaacctacctactgctgattctt
cctatcatctatggaatatggtttctttggtacaatgcaccaattgtgttcacttcaaag
tttcattcttggttttttgacccaatgatttttgagggaagggcagtggaatatgataac
tttcctgttttcttcaacaatttgttggttgtggtgttaacttgttttttgtatgcattg
ttttgcactgttcttattgcaaaggggaaacatgcgcagagagggtcaacatctaaaaca
gtgagtcgacaaatagtgtttcaatcgacactcatatgtgctgtaaactttcttacttgc
gcaatttatgtaatcgagaactacataacagtccccttattgattgtgctaagtggtcaa
ttttgctggcaactcggaagtgctgc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGGTATTGCTCATGTCTCACGACAA 452 551 373 Antisense
GACAATGGGCATGTGCTTTTCGATG 347 365 439 Antisense
ATGATAAACGAACCTACCTACTGCT 327 47 461 Antisense
TACTGCTGATTCTTCCTATCATCTA 242 647 479 Antisense
AATGCACCAATTGTGTTCACTTCAA 602 165 526 Antisense
GGAAACATGCGCAGAGAGGGTCAAC 331 527 698 Antisense
GTGCTGTAAACTTTCTTACTTGCGC 573 477 770 Antisense
TCGAGAACTACATAACAGTCCCCTT 514 599 806 Antisense
AACAGTCCCCTTATTGATTGTGCTA 129 137 819 Antisense
AAGTGGTCAATTTTGCTGGCAACTC 348 159 843 Antisense
TTTGCTGGCAACTCGGAAGTGCTGC 493 643 854 Antisense
Sequence Source Affymetrix Proprietary Database