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[179819_s_at]

Description Y41E3.11 /REP_DB=WormBase Gene ID /WP=CE18379 /TR=Q9U2H8 /GB=CAB63361.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 71      6grp_high1_10_10 > 28      6grp_highest_nonorm > 50      6grp_total > 27      4grp_total > 23      6grp_highest_sub > De      6grp_high1_sub > De      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 250
1 2 3 4 range
A 485.8
(3)
P 		353.4
(-2.1)
A 		397.5
(-0.4)
P 		331.4
(-3)
P 		154
B 509.9
(2.4)
P 		285.3
(-3)
A 		421.6
(0.3)
P 		534.9
(3)
P 		250
C 438.5
(3)
P 		403.6
(1)
M 		335.2
(-3)
P 		425.6
(2.3)
P 		103
avr 478.1
(3) 		347.4
(-3) 		384.8
(-1.3) 		430.6
(0.8) 		131

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 427
1 2 3 4 5 6 range
A 623.7
(3)
P 		497.4
(0.7)
P 		295.2
(-3)
P 		300.3
(-2.9)
P 		439.6
(-0.4)
P 		576.1
(2.1)
P 		329
B 715.7
(3)
P 		463.8
(-0.7)
P 		408.5
(-1.5)
P 		358.2
(-2.2)
P 		305.1
(-3)
P 		426.6
(-1.2)
P 		411
C 653.8
(3)
P 		455
(-0.3)
P 		416.6
(-0.9)
P 		301.9
(-2.8)
P 		438.2
(-0.5)
P 		288.4
(-3)
P 		365
avr 664.4
(3) 		472.1
(-0.4) 		373.4
(-2.1) 		320.1
(-3) 		394.3
(-1.7) 		430.4
(-1.1) 		344
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 128
1 2 3 4 range
A 176.9
(3)
P 		76.7
(-1.7)
A 		103.9
(-0.4)
P 		48.5
(-3)
P 		128
B 162.6
(3)
P 		70.5
(-3)
A 		97.7
(-1.2)
P 		114
(-0.2)
P 		92
C 145.2
(3)
P 		116
(0.6)
M 		116.8
(0.7)
P 		71.8
(-3)
P 		73
avr 161.6
(3) 		87.7
(-2.3) 		106.1
(-1) 		78.1
(-3) 		84

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 188
1 2 3 4 5 6 range
A 115
(-0.3)
P 		176.9
(3)
P 		64.3
(-3)
P 		76.2
(-2.4)
P 		132.7
(0.6)
P 		140.3
(1)
P 		113
B 249
(3)
P 		154.4
(-0.7)
P 		99.2
(-2.8)
P 		94.9
(-3)
P 		124
(-1.9)
P 		159.1
(-0.5)
P 		154
C 242.3
(3)
P 		138.8
(-0.4)
P 		106
(-1.5)
P 		60.7
(-3)
P 		141.8
(-0.3)
P 		96.6
(-1.8)
P 		182
avr 202.1
(3) 		156.7
(0.8) 		89.8
(-2.4) 		77.3
(-3) 		132.8
(-0.3) 		132
(-0.4) 		125
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 179819_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9178
Sequence Type Exemplar sequence
Representative Public ID Y41E3.11 NCBI
Target Description Y41E3.11 /REP_DB=WormBase Gene ID /WP=CE18379 /TR=Q9U2H8 /GB=CAB63361.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070417(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070417 NCBI Caenorhabditis elegans Y41E3.11 (Y41E3.11) mRNA, complete cds. 11/11 None
SNAP00000001446 ENSEMBL cdna:SNAP chromosome:CEL140:IV:15040037:15048898:1 11/11 None
GENEFINDER00000001472 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:15040037:15049886:1 11/11 None
Y41E3.11 ENSEMBL cdna:known chromosome:CEL140:IV:15042398:15049328:1 gene:Y41E3.11 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:15043016-15048904(+) 97.46 100.0
Public Domain and Genome References
Gene Title
Ensembl Y41E3.11
Entrez Gene 178421 Entrez gene
SwissProt Q9U2H8 EMBL-EBI
WormBase CE18379 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE:1597114_AT similar to E1B-55kDa-associated protein 5 isoform d cfa
CANINE_2:CFA.17434.1.S1_AT similar to E1B-55kDa-associated protein 5 isoform d cfa
CANINE_2:CFA.17694.1.S1_S_AT similar to E1B-55kDa-associated protein 5 isoform d cfa
CANINE_2:CFAAFFX.8467.1.S1_S_AT similar to E1B-55kDa-associated protein 5 isoform d cfa
CANINE_2:CFAAFFX.8468.1.S1_AT similar to E1B-55kDa-associated protein 5 isoform d cfa
DROSOPHILA_2:1640997_AT dm
DROSGENOME1:154274_AT dm
DROSGENOME1:147452_AT dm
HG-U133_PLUS_2:208713_AT heterogeneous nuclear ribonucleoprotein U-like 1 hs
HG-U133A_2:208713_AT heterogeneous nuclear ribonucleoprotein U-like 1 hs
HG-U133A:208713_AT heterogeneous nuclear ribonucleoprotein U-like 1 hs
HG-U133_PLUS_2:209675_S_AT heterogeneous nuclear ribonucleoprotein U-like 1 hs
HG-U133A:209675_S_AT heterogeneous nuclear ribonucleoprotein U-like 1 hs
HG-U133A_2:209675_S_AT heterogeneous nuclear ribonucleoprotein U-like 1 hs
U133_X3P:G13278995_3P_S_AT heterogeneous nuclear ribonucleoprotein U-like 1 hs
U133_X3P:HS.155218.0.S2_3P_AT heterogeneous nuclear ribonucleoprotein U-like 1 hs
HG-U95AV2:40106_AT heterogeneous nuclear ribonucleoprotein U-like 1 hs
HG-U95D:74659_AT heterogeneous nuclear ribonucleoprotein U-like 1 hs
HG-U95D:74657_AT Heterogeneous nuclear ribonucleoprotein U-like 1 hs
HU35KSUBC:RC_N24902_AT Heterogeneous nuclear ribonucleoprotein U-like 1 hs
MOE430A:1451984_AT heterogeneous nuclear ribonucleoprotein U-like 1 mm
MOUSE430A_2:1451984_AT heterogeneous nuclear ribonucleoprotein U-like 1 mm
MOUSE430_2:1451984_AT heterogeneous nuclear ribonucleoprotein U-like 1 mm
MG-U74BV2:109745_AT heterogeneous nuclear ribonucleoprotein U-like 1 mm
MG-U74BV2:165158_I_AT heterogeneous nuclear ribonucleoprotein U-like 1 mm
MU19KSUBA:TC16274_AT Heterogeneous nuclear ribonucleoprotein U-like 1 (Hnrpul1), transcript variant 1, mRNA mm
MU19KSUBA:TC21962_AT Heterogeneous nuclear ribonucleoprotein U-like 1 (Hnrpul1), transcript variant 1, mRNA mm
MU19KSUBA:TC23983_AT Heterogeneous nuclear ribonucleoprotein U-like 1 (Hnrpul1), transcript variant 1, mRNA mm
MU19KSUBA:TC25286_AT Heterogeneous nuclear ribonucleoprotein U-like 1 (Hnrpul1), transcript variant 1, mRNA mm
RG-U34B:RC_AA925304_AT heterogeneous nuclear ribonucleoprotein U-like 1 (predicted) rn
RG-U34C:RC_AI172074_AT heterogeneous nuclear ribonucleoprotein U-like 1 (predicted) rn
RAE230A:1399099_AT heterogeneous nuclear ribonucleoprotein U-like 1 (predicted) rn
RAT230_2:1399099_AT heterogeneous nuclear ribonucleoprotein U-like 1 (predicted) rn
Protein Similarities
Method ID Description E-Value
blast CAB63361 Hypothetical protein Y41E3.11 [Caenorhabditis elegans] ref|NP_502818.1| Y41E3.11 [Caenorhabditis elegans] 0.0
blast CAE56115 Hypothetical protein CBG23721 [Caenorhabditis briggsae] 0.0
blast CAB54437 Hypothetical protein Y41E3.16 [Caenorhabditis elegans] ref|NP_502817.1| Y41E3.16 [Caenorhabditis elegans] 1.0E-140
blast CAB54437 Hypothetical protein Y41E3.16 [Caenorhabditis elegans] ref|NP_502817.1| Y41E3.16 [Caenorhabditis elegans] 1.0E-133
Protein Domains
Database ID Description E-Value
Pfam IPR003877 EMBL-EBI SPla/RYanodine receptor SPRY 1.7E-24
Pfam IPR003034 EMBL-EBI DNA-binding SAP 5.8E-8
Pfam IPR003877 EMBL-EBI SPla/RYanodine receptor SPRY 1.7E-24
Pfam IPR003877 EMBL-EBI SPla/RYanodine receptor SPRY 1.7E-24
Sequence
Target Sequence 
>C. ELEGANS:179819_S_AT
ccaccgcctgtagtgatggctgctccggcatcggcggctccgcagactccaattcagcag
cagcagaagattcagcaggttcagcaaccgaagaaggttgaagtttcgcaacccctcacc
ctgaacacgtcgtcacttccacgaaaatcaacggattcttctgctggaccattatcaatt
gtatcatctgctggaggaagatcctcatcattcactcaacaatcgccacgtttcgcgacc
actccgattccatcggtgattcctccaacgacaactccagtgcaacaaattccagttatg
atgaacatatcacagccaccaccacagattatgatgagtattccaccaccatcaatgatg
gttcagcacatgagacagccaccggttgtttttccgattgatgtgacagtaccaccgccc
aacttctcagctccaccaccgatgcttccagcgtcagcaggcatcccaccgcatcttctg
atgtatcatcatcatcaaatgtctgcacctcca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CCACCGCCTGTAGTGATGGCTGCTC 132 275 2185 Antisense
CACGTCGTCACTTCCACGAAAATCA 572 199 2310 Antisense
AATCAACGGATTCTTCTGCTGGACC 379 171 2330 Antisense
GAGGAAGATCCTCATCATTCACTCA 468 405 2378 Antisense
CTCAACAATCGCCACGTTTCGCGAC 33 229 2399 Antisense
GACCACTCCGATTCCATCGGTGATT 63 385 2421 Antisense
TCCAACGACAACTCCAGTGCAACAA 382 587 2448 Antisense
GGTTCAGCACATGAGACAGCCACCG 302 507 2544 Antisense
GCCACCGGTTGTTTTTCCGATTGAT 573 279 2562 Antisense
GATGCTTCCAGCGTCAGCAGGCATC 594 413 2625 Antisense
TCATCATCAAATGTCTGCACCTCCA 456 621 2673 Antisense
Sequence Source Affymetrix Proprietary Database