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[179818_at]

Description C06G3.3 /REP_DB=WormBase Gene ID /WP=CE07979 /TR=Q17751 /GB=AAB03133.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 85      6grp_total > 85      4grp_total > 02      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 6978
1 2 3 4 range
A 126.7
(-2.9)
A 		83.2
(-3)
A 		54.8
(-3)
A 		6989.7
(3)
P 		6935
B 42.7
(-3)
A 		11.3
(-3)
A 		11.5
(-3)
A 		6785.5
(3)
P 		6774
C 82.5
(-3)
A 		64.5
(-3)
P 		71.6
(-3)
A 		6495.9
(3)
P 		6431
avr 84
(-3) 		53
(-3) 		46
(-3) 		6757
(3) 		6711

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2031
1 2 3 4 5 6 range
A 79.1
(-3)
M 		241.5
(-2.1)
P 		1055.1
(2.4)
P 		780.7
(0.9)
P 		1172
(3)
P 		1116.8
(2.7)
P 		1093
B 56.5
(-3)
P 		281.4
(-2.1)
P 		1449.6
(2.9)
P 		929.5
(0.7)
P 		1483.8
(3)
P 		1381.7
(2.6)
P 		1427
C 108.2
(-3)
P 		164.2
(-2.8)
P 		650.8
(-1.4)
P 		667.3
(-1.3)
P 		1014.4
(-0.3)
P 		2087.6
(3)
P 		1979
avr 81.3
(-3) 		229
(-2.4) 		1051.8
(1) 		792.5
(-0.1) 		1223.4
(1.7) 		1528.7
(3) 		1447
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1443
1 2 3 4 range
A 46.1
(-2.8)
A 		18.1
(-3)
A 		14.3
(-3)
A 		1023.2
(3)
P 		1009
B 13.6
(-3)
A 		2.8
(-3)
A 		2.7
(-3)
A 		1446
(3)
P 		1443
C 27.3
(-3)
A 		18.6
(-3)
P 		25
(-3)
A 		1095.3
(3)
P 		1077
avr 29
(-2.9) 		13.2
(-3) 		14
(-3) 		1188.2
(3) 		1175

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 684
1 2 3 4 5 6 range
A 14.6
(-3)
M 		85.9
(-1.7)
P 		229.8
(0.8)
P 		198
(0.2)
P 		353.7
(3)
P 		271.9
(1.6)
P 		339
B 19.7
(-3)
P 		93.7
(-2.2)
P 		352
(0.4)
P 		246.2
(-0.7)
P 		602.8
(3)
P 		515.2
(2.1)
P 		583
C 40.1
(-3)
P 		50.1
(-2.9)
P 		165.6
(-1.9)
P 		134.2
(-2.1)
P 		328.2
(-0.4)
P 		698.8
(3)
P 		659
avr 24.8
(-3) 		76.6
(-2.3) 		249.1
(-0.1) 		192.8
(-0.9) 		428.2
(2.1) 		495.3
(3) 		471
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179818_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9908
Sequence Type Exemplar sequence
Representative Public ID C06G3.3 NCBI
Target Description C06G3.3 /REP_DB=WormBase Gene ID /WP=CE07979 /TR=Q17751 /GB=AAB03133.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068690(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068690 NCBI Caenorhabditis elegans C06G3.3 (C06G3.3) mRNA, complete cds. 11/11 None
C06G3.3 ENSEMBL cdna:known chromosome:CEL140:IV:7036113:7036431:1 gene:C06G3.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:7036118-7036368(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C06G3.3
Entrez Gene 177472 Entrez gene
WormBase CE07979 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB03133 Hypothetical protein C06G3.3 [Caenorhabditis elegans] ref|NP_501091.1| C06G3.3 [Caenorhabditis elegans] 2.0E-21
Sequence
Target Sequence 
>C. ELEGANS:179818_AT
ccatctcccgcaattctaatgccaaagtctatattaaagaaacctgatcaaagccaacac
gagtcaccatcaaattctccagtttctccatcaccccaagaagttccacgtggcaaaaaa
gaatggtggcttccatttaatataccatttcat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CCATCTCCCGCAATTCTAATGCCAA 400 271 22 Antisense
CTCCCGCAATTCTAATGCCAAAGTC 201 235 26 Antisense
CAATTCTAATGCCAAAGTCTATATT 277 179 32 Antisense
TAAAGAAACCTGATCAAAGCCAACA 212 641 56 Antisense
AGCCAACACGAGTCACCATCAAATT 155 85 73 Antisense
CCAACACGAGTCACCATCAAATTCT 672 275 75 Antisense
ACGAGTCACCATCAAATTCTCCAGT 507 93 80 Antisense
CATCACCCCAAGAAGTTCCACGTGG 691 199 110 Antisense
GTGGCAAAAAAGAATGGTGGCTTCC 223 485 131 Antisense
GGTGGCTTCCATTTAATATACCATT 191 499 146 Antisense
GCTTCCATTTAATATACCATTTCAT 267 305 150 Antisense
Sequence Source Affymetrix Proprietary Database