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[179817_at]

Description C46A5.6 /REP_DB=WormBase Gene ID /WP=CE08756 /TR=Q18650 /GB=AAB03146.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 97      4grp_total > 08      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 316
1 2 3 4 range
A 72
(-3)
A 		102.6
(-2.4)
A 		176.6
(-0.9)
P 		376.3
(3)
P 		304
B 69.6
(-3)
A 		99.7
(-2.4)
A 		159.2
(-1.3)
P 		380.1
(3)
P 		311
C 63.9
(-3)
A 		65.3
(-3)
A 		179.8
(-0.7)
P 		365.6
(3)
P 		302
avr 68.5
(-3) 		89.2
(-2.6) 		171.9
(-1) 		374
(3) 		306

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 892
1 2 3 4 5 6 range
A 19.1
(-3)
A 		17.3
(-3)
A 		110.9
(-2.4)
M 		315.7
(-1)
P 		617.7
(1)
P 		909.5
(3)
P 		892
B 70.4
(-3)
A 		134.1
(-2.5)
A 		175.2
(-2.2)
P 		272.5
(-1.4)
P 		582.2
(1.1)
P 		813.2
(3)
P 		743
C 70
(-3)
A 		82.7
(-2.9)
P 		158.8
(-2.3)
P 		299.5
(-1.3)
P 		524.2
(0.4)
P 		861.5
(3)
P 		792
avr 53.2
(-3) 		78
(-2.8) 		148.3
(-2.3) 		295.9
(-1.2) 		574.7
(0.9) 		861.4
(3) 		808
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 62
1 2 3 4 range
A 26.2
(-2.3)
A 		22.3
(-3)
A 		46.2
(1.4)
P 		55.1
(3)
P 		33
B 22.2
(-3)
A 		24.6
(-2.8)
A 		36.9
(-1.5)
P 		81
(3)
P 		59
C 21.2
(-2.7)
A 		18.8
(-3)
A 		62.7
(3)
P 		61.6
(2.8)
P 		44
avr 23.2
(-2.8) 		21.9
(-3) 		48.6
(0.6) 		65.9
(3) 		44

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 300
1 2 3 4 5 6 range
A 3.5
(-3)
A 		6.2
(-2.9)
A 		24.2
(-2.4)
M 		80.1
(-0.9)
P 		186.4
(2)
P 		221.4
(3)
P 		218
B 24.5
(-3)
A 		44.6
(-2.6)
A 		42.6
(-2.6)
P 		72.2
(-2)
P 		236.5
(1.6)
P 		303.2
(3)
P 		279
C 25.9
(-3)
A 		25.2
(-3)
P 		40.4
(-2.7)
P 		60.2
(-2.2)
P 		169.6
(0.3)
P 		288.4
(3)
P 		263
avr 18
(-3) 		25.3
(-2.8) 		35.7
(-2.6) 		70.8
(-1.7) 		197.5
(1.3) 		271
(3) 		253
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179817_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8661
Sequence Type Exemplar sequence
Representative Public ID C46A5.6 NCBI
Target Description C46A5.6 /REP_DB=WormBase Gene ID /WP=CE08756 /TR=Q18650 /GB=AAB03146.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068874(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068874 NCBI Caenorhabditis elegans C46A5.6 (C46A5.6) mRNA, complete cds. 11/11 None
SNAP00000025531 ENSEMBL cdna:SNAP chromosome:CEL140:IV:7760113:7763825:-1 11/11 None
C46A5.6 ENSEMBL cdna:known chromosome:CEL140:IV:7760113:7763825:-1 gene:C46A5.6 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000025540 8/11 Cross Hyb Matching Probes None
GENEFINDER00000025544 2/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:7760118-7763831(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C46A5.6
Entrez Gene 183500 Entrez gene
SwissProt Q18650 EMBL-EBI
WormBase CE08756 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB03146 Hypothetical protein C46A5.6 [Caenorhabditis elegans] ref|NP_501275.1| C46A5.6 [Caenorhabditis elegans] 1.0E-168
blast CAE70874 Hypothetical protein CBG17664 [Caenorhabditis briggsae] 1.0E-34
Sequence
Target Sequence 
>C. ELEGANS:179817_AT
tgggactcaattggcttttcgacactgactatcctcgcgatgcaggttctggagatctac
ttaactcaacattccgtattgaccatcgtaaccatggagaaggaacatcacaaataacag
agtcgccgaaaaatagagatttcccactgtttttctcttcttttgatgacactaccgtac
tcttcaatacaactattgccggagacattgatgtaaatgagagaaatcaagcttccggtg
attggattttcagaaaagataagtctcccacaaatgatccgattgaaaatgaccaagaga
cagatgaaaagaccaaatctgagcttggagatggtggcgaaattgttttcaaagagccgg
tacaaagtacaaagaaaacacgcggaagaaaacgaggaacatcagttcgcatcgagaaac
tatcgacctctcgtcgtacttctgccaaaaagaaagaggaaaagcaaaaggagacggaga
cattcgatgcagataagaatgaaaatccatccacaccaactgcaccaccaacaatgacga
gaagacacacgccatcaagaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGGGACTCAATTGGCTTTTCGACAC 128 553 371 Antisense
TGACTATCCTCGCGATGCAGGTTCT 565 567 396 Antisense
AGATCTACTTAACTCAACATTCCGT 170 67 423 Antisense
ACATTCCGTATTGACCATCGTAACC 468 103 439 Antisense
AATAGAGATTTCCCACTGTTTTTCT 76 173 502 Antisense
TTCTCTTCTTTTGATGACACTACCG 515 689 523 Antisense
ATGACACTACCGTACTCTTCAATAC 320 45 536 Antisense
TAAGTCTCCCACAAATGATCCGATT 281 635 630 Antisense
AAACTATCGACCTCTCGTCGTACTT 236 71 787 Antisense
GAATGAAAATCCATCCACACCAACT 185 329 867 Antisense
ACGAGAAGACACACGCCATCAAGAA 174 93 907 Antisense
Sequence Source Affymetrix Proprietary Database