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[179816_at] 7TM chemoreceptor, srw family

Description H24D24.1 /REP_DB=WormBase Gene ID /WP=CE18821 /TR=Q9XXM4 /GB=CAA18357.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 10      4grp_total > 0      6grp_cgc > 63      6grp_cgc_sub > 02      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 56
1 2 3 4 range
A 35
(0.2)
A 		5.5
(-3)
A 		5.7
(-3)
A 		61.4
(3)
A 		56
B 35
(1)
A 		7.6
(-3)
A 		47
(2.8)
A 		48.3
(3)
A 		41
C 7.8
(-2.9)
A 		7.5
(-3)
A 		26.8
(3)
A 		9.1
(-2.5)
A 		19
avr 25.9
(0.5) 		6.9
(-3) 		26.5
(0.6) 		39.6
(3) 		33

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 62
1 2 3 4 5 6 range
A 9.3
(-2.6)
A 		43.4
(3)
A 		39.2
(2.3)
A 		6.9
(-3)
A 		7.4
(-2.9)
A 		29.5
(0.7)
A 		37
B 6.6
(-2.6)
A 		37.8
(0.4)
A 		2.2
(-3)
A 		64.4
(3)
A 		16.4
(-1.6)
A 		4.7
(-2.8)
A 		62
C 6.9
(-0.4)
A 		5.9
(-1.3)
A 		6.1
(-1.2)
A 		9.3
(1.8)
A 		4.1
(-3)
A 		10.6
(3)
A 		7
avr 7.6
(-3) 		29
(3) 		15.8
(-0.7) 		26.9
(2.4) 		9.3
(-2.5) 		14.9
(-1) 		21
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12
1 2 3 4 range
A 12.7
(3)
A 		1.2
(-3)
A 		1.5
(-2.8)
A 		9
(1.1)
A 		12
B 11.2
(3)
A 		1.9
(-3)
A 		10.9
(2.8)
A 		10.3
(2.4)
A 		9
C 2.6
(-2.2)
A 		2.2
(-2.5)
A 		9.3
(3)
A 		1.5
(-3)
A 		8
avr 8.8
(3) 		1.8
(-3) 		7.2
(1.6) 		6.9
(1.4) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 17
1 2 3 4 5 6 range
A 1.7
(-3)
A 		15.4
(3)
A 		8.5
(-0)
A 		1.7
(-3)
A 		2.2
(-2.8)
A 		7.2
(-0.6)
A 		14
B 2.3
(-2.3)
A 		12.6
(1.4)
A 		0.5
(-3)
A 		17
(3)
A 		6.7
(-0.7)
A 		1.7
(-2.6)
A 		17
C 2.6
(0.5)
A 		1.8
(-1.6)
A 		1.5
(-2.5)
A 		1.9
(-1.4)
A 		1.3
(-3)
A 		3.5
(3)
A 		2
avr 2.2
(-3) 		9.9
(3) 		3.5
(-2) 		6.9
(0.7) 		3.4
(-2.1) 		4.1
(-1.5) 		8
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179816_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13147
Sequence Type Exemplar sequence
Representative Public ID H24D24.1 NCBI
Target Description H24D24.1 /REP_DB=WormBase Gene ID /WP=CE18821 /TR=Q9XXM4 /GB=CAA18357.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074595(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074595 NCBI Caenorhabditis elegans Serpentine Receptor, class W family member (srw-59) (srw-59) mRNA, complete cds. 11/11 None
GENEFINDER00000020483 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:15950037:15953513:-1 11/11 None
H24D24.1 ENSEMBL cdna:known chromosome:CEL140:V:15952299:15953586:-1 gene:H24D24.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:15952298-15953586(-) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, srw family
Gene Symbol srw-59
Ensembl H24D24.1
Entrez Gene 186771 Entrez gene
SwissProt Q9XXM4 EMBL-EBI
WormBase CE18821 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
7186 G-protein coupled receptor protein signaling pathway inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16021 integral to membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
1584 rhodopsin-like receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA18357 Hypothetical protein H24D24.1 [Caenorhabditis elegans] ref|NP_506996.1| Serpentine Receptor, class W family member (srw-59) [Caenorhabditis elegans] 0.0
blast CAA18357 Hypothetical protein H24D24.1 [Caenorhabditis elegans] ref|NP_506996.1| Serpentine Receptor, class W family member (srw-59) [Caenorhabditis elegans] 1.0E-167
blast CAA18358 Hypothetical protein H24D24.2 [Caenorhabditis elegans] ref|NP_506995.1| Serpentine Receptor, class W family member (srw-58) [Caenorhabditis elegans] 1.0E-165
blast CAB04333 Hypothetical protein F36G9.1 [Caenorhabditis elegans] ref|NP_506997.2| Serpentine Receptor, class W family member (srw-57) [Caenorhabditis elegans] 1.0E-113
blast CAB04333 Hypothetical protein F36G9.1 [Caenorhabditis elegans] ref|NP_506997.2| Serpentine Receptor, class W family member (srw-57) [Caenorhabditis elegans] 3.0E-99
blast CAE17829 Hypothetical protein F36G9.16 [Caenorhabditis elegans] ref|NP_001023889.1| Serpentine Receptor, class W family member (srw-56) [Caenorhabditis elegans] 2.0E-96
Protein Domains
Database ID Description E-Value
Pfam IPR010726 EMBL-EBI Protein of unknown function DUF1300 3.5E-30
Pfam IPR010726 EMBL-EBI Protein of unknown function DUF1300 3.5E-30
Pfam IPR010726 EMBL-EBI Protein of unknown function DUF1300 5.4E-33
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_506996.1 7 34-51,58-80,125-147,152-174,223-245,266-288,303-325
H24D24.1 7 34-51,58-80,125-147,152-174,223-245,266-288,303-325
GENEFINDER00000020483 12 10-27,34-56,101-123,128-150,199-221,242-264,279-301,371-393,435-457,470-492,540-562,583-605
Sequence
Target Sequence 
>C. ELEGANS:179816_AT
attcttttcgtggtctgtcttccacatatcgtatactggattttcgagtttcaatggacg
gaaattagggaatacggcatttgggagattccttctggttgcgctaatttcacttatacc
tccccacgtataatttactccatggggcctgaggaataccaaaatgaaactttgcttcta
gtagaaggaattttctttactttgattccatctataattcttccgattgtcactatagtt
ctaatttattttctgaaaactatgaaaaggtcaacagcatctaacaataataatcacaat
gctcgttctacaaaaatggtagcattagtgactgttacctttctattagctactgttcct
cttgggata

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATTCTTTTCGTGGTCTGTCTTCCAC 553 11 493 Antisense
GTCTGTCTTCCACATATCGTATACT 338 471 505 Antisense
ATTTGGGAGATTCCTTCTGGTTGCG 390 13 571 Antisense
GTTGCGCTAATTTCACTTATACCTC 166 441 590 Antisense
CCTCCCCACGTATAATTTACTCCAT 431 265 611 Antisense
TACTCCATGGGGCCTGAGGAATACC 606 645 628 Antisense
AATTTTCTTTACTTTGATTCCATCT 445 175 681 Antisense
TGATTCCATCTATAATTCTTCCGAT 569 563 695 Antisense
TCTTCCGATTGTCACTATAGTTCTA 409 617 711 Antisense
GACTGTTACCTTTCTATTAGCTACT 299 375 822 Antisense
ATTAGCTACTGTTCCTCTTGGGATA 499 13 837 Antisense
Sequence Source Affymetrix Proprietary Database