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[179814_at]

Description B0496.5 /REP_DB=WormBase Gene ID /WP=CE06717 /TR=Q17519 /GB=AAK18876.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 04      4grp_total > 02      6grp_rule_based > S1      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 153
1 2 3 4 range
A 67.6
(-2.4)
P 		58.6
(-3)
A 		82.4
(-1.4)
A 		150.3
(3)
P 		92
B 57.2
(-2.5)
A 		46.6
(-3)
A 		45.7
(-3)
A 		198.3
(3)
P 		153
C 54.5
(-2.9)
P 		55.9
(-2.8)
A 		53.3
(-3)
P 		154.3
(3)
P 		101
avr 59.8
(-2.7) 		53.7
(-3) 		60.5
(-2.6) 		167.6
(3) 		114

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 151
1 2 3 4 5 6 range
A 176.4
(3)
P 		118.2
(0.6)
P 		85.9
(-0.7)
P 		61.3
(-1.7)
P 		60.6
(-1.7)
P 		29.3
(-3)
A 		147
B 136.4
(2.8)
P 		140.2
(3)
P 		39.4
(-2.3)
P 		76.5
(-0.3)
P 		87.3
(0.2)
P 		25
(-3)
A 		115
C 126.5
(2.8)
P 		128.9
(3)
P 		82.2
(-0)
P 		74.7
(-0.5)
A 		65.7
(-1.1)
M 		36.9
(-3)
A 		92
avr 146.4
(3) 		129.1
(2.1) 		69.2
(-1) 		70.8
(-0.9) 		71.2
(-0.9) 		30.4
(-3) 		116
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 32
1 2 3 4 range
A 24.6
(3)
P 		12.7
(-3)
A 		21.6
(1.5)
A 		22
(1.7)
P 		12
B 18.3
(-1.5)
A 		11.5
(-2.8)
A 		10.6
(-3)
A 		42.3
(3)
P 		32
C 18.1
(-1.8)
P 		16.1
(-3)
A 		18.6
(-1.5)
P 		26
(3)
P 		10
avr 20.3
(-0.5) 		13.4
(-3) 		16.9
(-1.7) 		30.1
(3) 		17

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 40
1 2 3 4 5 6 range
A 32.5
(1.4)
P 		42.1
(3)
P 		18.7
(-1)
P 		15.6
(-1.5)
P 		18.3
(-1.1)
P 		7.1
(-3)
A 		35
B 47.5
(3)
P 		46.7
(2.9)
P 		9.6
(-3)
P 		20.3
(-1.3)
P 		35.5
(1.1)
P 		9.3
(-3)
A 		38
C 46.9
(3)
P 		39.3
(1.7)
P 		20.9
(-1.5)
P 		15
(-2.5)
A 		21.3
(-1.4)
M 		12.3
(-3)
A 		35
avr 42.3
(2.9) 		42.7
(3) 		16.4
(-1.8) 		17
(-1.7) 		25
(-0.2) 		9.6
(-3) 		33
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179814_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8628
Sequence Type Exemplar sequence
Representative Public ID B0496.5 NCBI
Target Description B0496.5 /REP_DB=WormBase Gene ID /WP=CE06717 /TR=Q17519 /GB=AAK18876.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068782(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068782 NCBI Caenorhabditis elegans B0496.5 (B0496.5) mRNA, complete cds. 11/11 None
SNAP00000020640 ENSEMBL cdna:SNAP chromosome:CEL140:IV:7421197:7422498:1 11/11 None
GENEFINDER00000020655 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:7421197:7422498:1 11/11 None
B0496.5 ENSEMBL cdna:known chromosome:CEL140:IV:7421197:7422498:1 gene:B0496.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:7421202-7422504(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl B0496.5
Entrez Gene 182008 Entrez gene
SwissProt Q17519 EMBL-EBI
WormBase CE06717 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
18346 protein amino acid prenylation inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
8318 protein prenyltransferase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAK18876 Hypothetical protein B0496.5 [Caenorhabditis elegans] ref|NP_501183.1| B0496.5 [Caenorhabditis elegans] 0.0
blast CAE61876 Hypothetical protein CBG05861 [Caenorhabditis briggsae] 1.0E-176
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_501183.1 7 5-27,40-62,82-104,124-146,178-200,221-243,258-280
B0496.5 7 5-27,40-62,82-104,124-146,178-200,221-243,258-280
SNAP00000020640 7 5-27,40-62,82-104,124-146,178-200,221-243,258-280
GENEFINDER00000020655 7 5-27,40-62,82-104,124-146,178-200,221-243,258-280
Sequence
Target Sequence 
>C. ELEGANS:179814_AT
gattctcgattcaacagttccgttcgtgtgatgagccaatgccgttttgacgaagttgtg
ggagaagagtattatctgaaacacattttaacggtacaatggagtccaattatttgtgtt
ggaattctgtttttgaatattgttctgtattgtatcagacaatcaaaacataaatggagt
tacaattggtcagaagaaggaaaaacaaccaaacagttattcgcaacaattttcatccga
tgttttctctctggactatctgttcatgtaccacttcttgtaattgcccgtacaacggaa
ggccacgaactgattgcaattaaggatcatattattcgagtctcctattggattttcgtc
attatttttcagccactgtggcattttttgattctcagctcatttcaatcaaatgtttat
tcactttttaatcgatactcggagaatactgaaagaaaatggcaaagtgcaaatgatcca
ccagaagatggagctactcatttggatagacatggatcacccaatccatttggatctt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATTCTCGATTCAACAGTTCCGTTC 664 431 457 Antisense
AGTTCCGTTCGTGTGATGAGCCAAT 556 63 472 Antisense
GATGAGCCAATGCCGTTTTGACGAA 131 411 486 Antisense
CGATGTTTTCTCTCTGGACTATCTG 703 249 694 Antisense
TATCTGTTCATGTACCACTTCTTGT 324 659 713 Antisense
GGAAGGCCACGAACTGATTGCAATT 181 533 753 Antisense
GGATCATATTATTCGAGTCTCCTAT 662 511 780 Antisense
GAGTCTCCTATTGGATTTTCGTCAT 234 401 794 Antisense
TTCGTCATTATTTTTCAGCCACTGT 495 695 811 Antisense
GCCACTGTGGCATTTTTTGATTCTC 576 279 828 Antisense
GGATCACCCAATCCATTTGGATCTT 555 511 970 Antisense
Sequence Source Affymetrix Proprietary Database