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[179813_at]

Description F17A9.2 /REP_DB=WormBase Gene ID /WP=CE19798 /TR=O16216 /GB=AAB65279.2 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 67      6grp_high1_10_10 > 86      4grp_highest_8_8 > 19      4grp_high_8_8 > 63      6grp_highest_nonorm > 96      6grp_total > 76      4grp_total > 56      6grp_highest_sub > In      6grp_high1_sub > In      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 333
1 2 3 4 range
A 563.4
(-0.3)
P 		595
(0.8)
P 		659.7
(3)
P 		482.3
(-3)
P 		177
B 560.2
(-3)
P 		602.8
(-2)
P 		814.9
(3)
P 		690.6
(0.1)
P 		255
C 637.1
(0)
P 		526.2
(-3)
P 		746.4
(3)
P 		576.2
(-1.6)
P 		220
avr 586.9
(-2.6) 		574.7
(-3) 		740.3
(3) 		583
(-2.7) 		166

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 708
1 2 3 4 5 6 range
A 697.9
(-3)
P 		745.9
(-2.5)
P 		829.7
(-1.5)
P 		834.4
(-1.5)
P 		896.8
(-0.8)
P 		1237.1
(3)
P 		539
B 584.8
(-3)
P 		675.2
(-2.2)
P 		957.1
(0.2)
P 		865.3
(-0.6)
P 		778.9
(-1.4)
P 		1293.1
(3)
P 		708
C 612.6
(-3)
P 		696.3
(-2.2)
P 		753.9
(-1.6)
P 		906.5
(-0.2)
P 		830.8
(-0.9)
P 		1240.3
(3)
P 		628
avr 631.8
(-3) 		705.8
(-2.3) 		846.9
(-0.9) 		868.7
(-0.7) 		835.5
(-1) 		1256.8
(3) 		625
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 190
1 2 3 4 range
A 205.1
(3)
P 		129.2
(-0.4)
P 		172.5
(1.5)
P 		70.6
(-3)
P 		135
B 178.6
(1.5)
P 		148.9
(-2.8)
P 		188.8
(3)
P 		147.2
(-3)
P 		42
C 210.9
(1.2)
P 		151.3
(-1)
P 		260.1
(3)
P 		97.2
(-3)
P 		163
avr 198.2
(2.5) 		143.1
(-0.8) 		207.1
(3) 		105
(-3) 		102

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 354
1 2 3 4 5 6 range
A 128.7
(-3)
P 		265.3
(1.8)
P 		180.7
(-1.2)
P 		211.6
(-0.1)
P 		270.6
(1.9)
P 		301.2
(3)
P 		173
B 203.5
(-3)
P 		224.8
(-2.5)
P 		232.4
(-2.4)
P 		229.2
(-2.4)
P 		316.5
(-0.6)
P 		482.2
(3)
P 		279
C 227.1
(-1.8)
P 		212.5
(-2.2)
P 		191.9
(-2.8)
P 		182.3
(-3)
P 		268.8
(-0.8)
P 		415.2
(3)
P 		233
avr 186.4
(-3) 		234.2
(-1.7) 		201.7
(-2.6) 		207.7
(-2.4) 		285.3
(-0.2) 		399.5
(3) 		213
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179813_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11283
Sequence Type Exemplar sequence
Representative Public ID F17A9.2 NCBI
Target Description F17A9.2 /REP_DB=WormBase Gene ID /WP=CE19798 /TR=O16216 /GB=AAB65279.2 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072176(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072176 NCBI Caenorhabditis elegans F17A9.2 (F17A9.2) mRNA, complete cds. 11/11 None
SNAP00000021119 ENSEMBL cdna:SNAP chromosome:CEL140:V:6108885:6117243:1 11/11 None
GENEFINDER00000021128 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:6116464:6117243:1 11/11 None
F17A9.2 ENSEMBL cdna:known chromosome:CEL140:V:6110416:6117370:1 gene:F17A9.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:6110421-6117243(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F17A9.2
Entrez Gene 179000 Entrez gene
SwissProt O16216 EMBL-EBI
WormBase CE19798 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:247987_AT CwfJ-like family protein / zinc finger (CCCH-type) family protein at
CANINE:1605234_AT similar to CWF19-like 1, cell cycle control cfa
CANINE_2:CFA.2100.1.S1_S_AT similar to CWF19-like 1, cell cycle control cfa
CANINE_2:CFAAFFX.15131.1.S1_S_AT similar to CWF19-like 1, cell cycle control cfa
DROSOPHILA_2:1633565_AT dm
DROSGENOME1:147011_AT dm
HG-U133_PLUS_2:218787_X_AT CWF19-like 1, cell cycle control (S. pombe) hs
HG-U133A:218787_X_AT CWF19-like 1, cell cycle control (S. pombe) hs
HG-U133A_2:218787_X_AT CWF19-like 1, cell cycle control (S. pombe) hs
HU35KSUBA:R25043_AT CWF19-like 1, cell cycle control (S. pombe) hs
HU35KSUBD:RC_R43803_AT CWF19-like 1, cell cycle control (S. pombe) hs
U133_X3P:G8922811_3P_A_AT CWF19-like 1, cell cycle control (S. pombe) hs
U133_X3P:HS.78110.1.S1_3P_A_AT CWF19-like 1, cell cycle control (S. pombe) hs
HG-U133_PLUS_2:229038_AT CWF19-like 1, cell cycle control (S. pombe) hs
HG-U133B:229038_AT CWF19-like 1, cell cycle control (S. pombe) hs
HG-U133_PLUS_2:233568_X_AT CWF19-like 1, cell cycle control (S. pombe) hs
HG-U133B:233568_X_AT CWF19-like 1, cell cycle control (S. pombe) hs
HG-U95B:44799_AT CWF19-like 1, cell cycle control (S. pombe) hs
HG-U95B:54974_AT CWF19-like 1, cell cycle control (S. pombe) hs
HG-U95E:87824_AT CWF19-like 1, cell cycle control (S. pombe) hs
MOE430B:1431016_AT CWF19-like 1, cell cycle control (S. pombe) mm
MOUSE430_2:1431016_AT CWF19-like 1, cell cycle control (S. pombe) mm
MG-U74BV2:111898_AT CWF19-like 1, cell cycle control (S. pombe) mm
MG-U74BV2:111897_AT CWF19-like 1, cell cycle control (S. pombe) mm
MG-U74AV2:162256_R_AT CWF19-like 1, cell cycle control (S. pombe) mm
MG-U74AV2:162012_R_AT CWF19-like 1, cell cycle control (S. pombe) mm
MG-U74AV2:161942_F_AT CWF19-like 1, cell cycle control (S. pombe) mm
MG-U74AV2:161620_F_AT CWF19-like 1, cell cycle control (S. pombe) mm
MG-U74AV2:161449_F_AT CWF19-like 1, cell cycle control (S. pombe) mm
MOE430A:1439144_AT CWF19-like 1, cell cycle control (S. pombe) mm
MOUSE430A_2:1439144_AT CWF19-like 1, cell cycle control (S. pombe) mm
MOUSE430_2:1439144_AT CWF19-like 1, cell cycle control (S. pombe) mm
MOE430B:1434065_AT CWF19-like 1, cell cycle control (S. pombe) mm
MOUSE430_2:1434065_AT CWF19-like 1, cell cycle control (S. pombe) mm
MG-U74AV2:101667_AT CWF19-like 1, cell cycle control (S. pombe) mm
MU11KSUBA:AA571393_RC_AT CWF19-like 1, cell cycle control (S. pombe) mm
MU19KSUBA:TC20063_AT CWF19-like 1, cell cycle control (S. pombe), mRNA (cDNA clone MGC:47159 IMAGE:5096937) mm
Protein Similarities
Method ID Description E-Value
blast AAB65279 Hypothetical protein F17A9.2 [Caenorhabditis elegans] ref|NP_504577.1| F17A9.2 [Caenorhabditis elegans] 0.0
blast CAE64512 Hypothetical protein CBG09248 [Caenorhabditis briggsae] 0.0
blast T31706 hypothetical protein F17A9.3 - Caenorhabditis elegans 0.0
blast T31706 hypothetical protein F17A9.3 - Caenorhabditis elegans 1.0E-162
blast AAB65279 Hypothetical protein F17A9.2 [Caenorhabditis elegans] ref|NP_504577.1| F17A9.2 [Caenorhabditis elegans] 1.0E-118
Protein Domains
Database ID Description E-Value
Pfam IPR006767 EMBL-EBI Protein similar to CwfJ, C-terminal 2 1.8E-48
Pfam IPR004843 EMBL-EBI Metallo-phosphoesterase 0.0029
Pfam IPR006768 EMBL-EBI Protein similar to CwfJ, C-terminal 1 1.5E-67
Pfam IPR006767 EMBL-EBI Protein similar to CwfJ, C-terminal 2 1.8E-48
Pfam IPR006768 EMBL-EBI Protein similar to CwfJ, C-terminal 1 1.5E-67
Pfam IPR006767 EMBL-EBI Protein similar to CwfJ, C-terminal 2 1.8E-48
Pfam IPR006768 EMBL-EBI Protein similar to CwfJ, C-terminal 1 5.4E-67
Sequence
Target Sequence 
>C. ELEGANS:179813_AT
taaatgctacgcagccatgccgaaaggaccactcactgaagatcacgttatggttctatc
tgttggacatattcaatcacaagtttctgctccagttgaagttcgtgatgagattgaaaa
gttcaagagtgcgttcacattgatggcgaataagcaaggaaaagcattggtcacgtttga
acgtaatttccgcacacaacatttgcaagttcaaatggttatgatcgataaatcatcttc
gaaagcattgaaatcatcgtttacaactgctgctgcttgtgctggtttcgagttggtcac
aatgggtcctgatgaaagtcttctcgacatggtcaatgaaggatgtccatactttgtcgc
agagcttcctgatggatcaaagcttttcactagaagtatgaaaggattcccattgcattt
cggacgtgaagttcttgcttctacacctattctggat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TAAATGCTACGCAGCCATGCCGAAA 368 641 1035 Antisense
CATGCCGAAAGGACCACTCACTGAA 162 211 1050 Antisense
ATCACGTTATGGTTCTATCTGTTGG 224 29 1076 Antisense
TCAATCACAAGTTTCTGCTCCAGTT 45 633 1107 Antisense
GAACGTAATTTCCGCACACAACATT 640 347 1213 Antisense
ATCATCGTTTACAACTGCTGCTGCT 13 31 1287 Antisense
TGCTTGTGCTGGTTTCGAGTTGGTC 542 563 1308 Antisense
GAAGGATGTCCATACTTTGTCGCAG 434 333 1372 Antisense
TTGTCGCAGAGCTTCCTGATGGATC 525 707 1388 Antisense
AGGATTCCCATTGCATTTCGGACGT 1 57 1437 Antisense
TCTTGCTTCTACACCTATTCTGGAT 642 617 1467 Antisense
Sequence Source Affymetrix Proprietary Database