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[179812_at]

Description F58G4.4 /REP_DB=WormBase Gene ID /WP=CE07309 /TR=Q20997 /GB=AAG24133.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 02      4grp_total > 34      6grp_cgc > 42      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 55
1 2 3 4 range
A 56.3
(-3)
P 		97.1
(2.2)
A 		79
(-0.1)
A 		103
(3)
A 		47
B 75.6
(-0.9)
P 		74.7
(-1.1)
P 		97
(3)
A 		64.3
(-3)
A 		33
C 51.1
(-2.5)
A 		87.4
(3)
P 		47.6
(-3)
M 		84.2
(2.5)
P 		40
avr 61
(-3) 		86.4
(3) 		74.5
(0.2) 		83.8
(2.4) 		25

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 84
1 2 3 4 5 6 range
A 88.4
(3)
A 		37.3
(-1.8)
A 		71.4
(1.4)
A 		56.6
(0)
A 		84.1
(2.6)
P 		24.6
(-3)
A 		64
B 55.3
(-1.2)
A 		92.1
(3)
P 		56.2
(-1.1)
A 		56.3
(-1)
A 		50.5
(-1.7)
P 		39
(-3)
A 		53
C 60.1
(1.1)
A 		84.8
(3)
P 		20.3
(-2)
A 		8
(-3)
A 		47.8
(0.1)
P 		38.1
(-0.6)
P 		77
avr 67.9
(2.4) 		71.4
(3) 		49.3
(-0.5) 		40.3
(-2) 		60.8
(1.3) 		33.9
(-3) 		38
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11
1 2 3 4 range
A 20.5
(2.4)
P 		21.1
(3)
A 		20.7
(2.6)
A 		15.1
(-3)
A 		6
B 24.1
(3)
P 		18.4
(-0.3)
P 		22.5
(2.1)
A 		13.7
(-3)
A 		10
C 16.9
(-1.5)
A 		25.1
(3)
P 		16.6
(-1.7)
M 		14.2
(-3)
P 		11
avr 20.5
(2.2) 		21.5
(3) 		19.9
(1.7) 		14.3
(-3) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 29
1 2 3 4 5 6 range
A 16.3
(0.2)
A 		13.3
(-0.7)
A 		15.5
(-0.1)
A 		14.4
(-0.4)
A 		25.4
(3)
P 		6
(-3)
A 		19
B 19.2
(-1)
A 		30.7
(3)
P 		13.6
(-3)
A 		14.9
(-2.5)
A 		20.5
(-0.6)
P 		14.5
(-2.7)
A 		17
C 22.3
(2.1)
A 		25.9
(3)
P 		5.2
(-2.1)
A 		1.6
(-3)
A 		15.5
(0.4)
P 		12.7
(-0.3)
P 		24
avr 19.3
(1.2) 		23.3
(3) 		11.4
(-2.5) 		10.3
(-3) 		20.5
(1.7) 		11.1
(-2.6) 		13
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179812_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12502
Sequence Type Exemplar sequence
Representative Public ID F58G4.4 NCBI
Target Description F58G4.4 /REP_DB=WormBase Gene ID /WP=CE07309 /TR=Q20997 /GB=AAG24133.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072690(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072690 NCBI Caenorhabditis elegans F58G4.4 (F58G4.4) mRNA, complete cds. 11/11 None
SNAP00000010856 ENSEMBL cdna:SNAP chromosome:CEL140:V:8102212:8103075:1 11/11 None
GENEFINDER00000010867 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:8102212:8103075:1 11/11 None
F58G4.4 ENSEMBL cdna:known chromosome:CEL140:V:8102212:8103075:1 gene:F58G4.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:8102212-8103076(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol sdz-23
Ensembl F58G4.4
Entrez Gene 186544 Entrez gene
SwissProt Q20997 EMBL-EBI
WormBase CE07309 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAG24133 Hypothetical protein F58G4.4 [Caenorhabditis elegans] ref|NP_505091.1| F58G4.4 [Caenorhabditis elegans] 1.0E-147
Protein Domains
Database ID Description E-Value
Pfam IPR006209 EMBL-EBI EGF-like domain 1.0E-5
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_505091.1 2 7-29,200-222
F58G4.4 2 7-29,200-222
SNAP00000010856 2 7-29,200-222
GENEFINDER00000010867 2 7-29,200-222
Sequence
Target Sequence 
>C. ELEGANS:179812_AT
gagtttgttcttccaatgccaacatcttcttctcctattccaatctttgactacagtatt
caaacattaagtttgataactggaaatataatttctggaaagaaaaatgtcagattgccg
cttctcgtgaatgatccttgggttcacaaaacgatttcgaatgaaaatggagtttctgtc
ttcacatcaatccgatttgaatgccttccatctttttacggaccaaaatgtcaatactat
tgtacctctggagaaaaatgctccagggatgagtgtccaaaaaggaaatgccagaataat
tctcaatgtcaatttgatggatcagaatccaaatgtgtttgccagtcaggatatattgga
gagttctgcgagattgatcaaactgttttcaaccatccggccgattccgcagttgtactg
atgtgttcaatagttttcctgtcgctttttatcattatcatcgctgttatggtgattatg
aaacagaaaagacgaacgatcaccgagccaacgaattt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGTTTGTTCTTCCAATGCCAACAT 464 399 202 Antisense
CTTCTCCTATTCCAATCTTTGACTA 332 219 230 Antisense
AAAAATGTCAGATTGCCGCTTCTCG 607 129 304 Antisense
GCTTCTCGTGAATGATCCTTGGGTT 446 305 321 Antisense
GGAGTTTCTGTCTTCACATCAATCC 14 519 370 Antisense
ATCCGATTTGAATGCCTTCCATCTT 377 39 391 Antisense
GTCAATACTATTGTACCTCTGGAGA 412 463 431 Antisense
ATCAAACTGTTTTCAACCATCCGGC 196 27 578 Antisense
GTGTTCAATAGTTTTCCTGTCGCTT 302 485 624 Antisense
CCTGTCGCTTTTTATCATTATCATC 244 267 639 Antisense
GAACGATCACCGAGCCAACGAATTT 203 347 695 Antisense
Sequence Source Affymetrix Proprietary Database