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[179811_at]

Description F47B7.6 /REP_DB=WormBase Gene ID /WP=CE02747 /TR=Q20513 /GB=AAA80370.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 53      4grp_total > 34      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 102
1 2 3 4 range
A 4.4
(-3)
A 		87.6
(3)
A 		28.3
(-1.3)
A 		51.8
(0.4)
A 		83
B 11.4
(-3)
A 		15.2
(-2.3)
A 		13.2
(-2.7)
A 		42.3
(3)
A 		31
C 19.9
(-3)
A 		106
(3)
A 		34.4
(-2)
A 		31.4
(-2.2)
A 		86
avr 11.9
(-3) 		69.6
(3) 		25.3
(-1.6) 		41.8
(0.1) 		58

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 24
1 2 3 4 5 6 range
A 13.4
(-0.9)
A 		5.2
(-3)
A 		28.5
(3)
A 		14.3
(-0.7)
A 		9.7
(-1.8)
A 		7.8
(-2.3)
A 		23
B 13
(-0.2)
A 		5.8
(-2.6)
A 		22.4
(3)
A 		4.7
(-3)
A 		9.6
(-1.3)
A 		15.6
(0.7)
A 		18
C 8.6
(-1.1)
A 		11
(0.4)
A 		6.2
(-2.6)
A 		5.5
(-3)
A 		15.3
(3)
A 		7
(-2.1)
A 		10
avr 11.7
(-0.7) 		7.3
(-3) 		19
(3) 		8.2
(-2.5) 		11.5
(-0.8) 		10.1
(-1.6) 		12
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 29
1 2 3 4 range
A 1.6
(-3)
A 		19
(3)
A 		7.4
(-1)
A 		7.6
(-0.9)
A 		17
B 3.6
(-2.5)
A 		3.8
(-2.3)
A 		3.1
(-3)
A 		9
(3)
A 		6
C 6.6
(-2.7)
A 		30.5
(3)
A 		12
(-1.4)
A 		5.3
(-3)
A 		25
avr 3.9
(-3) 		17.8
(3) 		7.5
(-1.4) 		7.3
(-1.5) 		14

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 5
1 2 3 4 5 6 range
A 2.5
(-2.2)
A 		1.9
(-3)
A 		6.2
(3)
A 		3.6
(-0.6)
A 		2.9
(-1.6)
A 		1.9
(-3)
A 		4
B 4.5
(1.3)
A 		1.9
(-2.2)
A 		5.4
(2.5)
A 		1.3
(-3)
A 		3.9
(0.5)
A 		5.8
(3)
A 		5
C 3.2
(0.2)
A 		3.4
(0.5)
A 		1.6
(-2.2)
A 		1.1
(-3)
A 		5
(3)
A 		2.3
(-1.2)
A 		4
avr 3.4
(0.5) 		2.4
(-2) 		4.4
(3) 		2
(-3) 		3.9
(1.8) 		3.3
(0.2) 		2
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179811_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18359
Sequence Type Exemplar sequence
Representative Public ID F47B7.6 NCBI
Target Description F47B7.6 /REP_DB=WormBase Gene ID /WP=CE02747 /TR=Q20513 /GB=AAA80370.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076250(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076250 NCBI Caenorhabditis elegans F47B7.6 (F47B7.6) mRNA, complete cds. 11/11 None
F47B7.6 ENSEMBL cdna:known chromosome:CEL140:X:3769715:3770627:-1 gene:F47B7.6 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000025969 8/11 Cross Hyb Matching Probes None
GENEFINDER00000025973 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:3769715-3770628(-) 87.65 100.0
Public Domain and Genome References
Gene Title
Ensembl F47B7.6
Entrez Gene 185893 Entrez gene
SwissProt Q20513 EMBL-EBI
WormBase CE02747 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA80370 Hypothetical protein F47B7.6 [Caenorhabditis elegans] ref|NP_508651.1| F47B7.6 [Caenorhabditis elegans] 1.0E-121
Sequence
Target Sequence 
>C. ELEGANS:179811_AT
taccctccgcttgatgcaaatcgcgaggagcgagtccagatccaatgggctacccatcac
cattggatcaactgcaaagtctcccacttgagactgagcagcaccgccgaggcctccaag
gaccaactagtccagcatggatcgacaaaagcgcatgagcgccggcaagcgtcaggaaga
ggaggatttgcgcaaggctatccaactcagcttaggagactccctcggtcatcaccctgc
tacgctaccccccctccccccccggaacgctcttatcacgccgatcactacgctgtcgac
acttacgactcaaggctaccctccacctcgcagttggccgcctctcgcgatcacatgcca
cacgactatcaatcgtcgaattcgatgggctacccaaccccgtcgatcctgcaggttgga
ggcatgcaagttatgcttcaaaggctaaccaaggacatggtttcgcccagcggctcatgg
actcaaacccgccggccactcagagggacagcggaagcgggaagaaaggcaatcgccagt
tcttgcccactattgaaggt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TACCCTCCGCTTGATGCAAATCGCG 140 647 64 Antisense
AGTCCAGATCCAATGGGCTACCCAT 248 61 96 Antisense
GCTACCCATCACCATTGGATCAACT 279 303 112 Antisense
TCAACTGCAAAGTCTCCCACTTGAG 703 629 131 Antisense
CATGAGCGCCGGCAAGCGTCAGGAA 266 209 217 Antisense
GATTTGCGCAAGGCTATCCAACTCA 498 427 248 Antisense
CAACTCAGCTTAGGAGACTCCCTCG 240 189 266 Antisense
ATCACTACGCTGTCGACACTTACGA 16 27 347 Antisense
ATCACATGCCACACGACTATCAATC 23 29 413 Antisense
CCGTCGATCCTGCAGGTTGGAGGCA 353 265 463 Antisense
CCAGTTCTTGCCCACTATTGAAGGT 228 273 599 Antisense
Sequence Source Affymetrix Proprietary Database