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[179810_at]

Description Y68A4A.6 /REP_DB=WormBase Gene ID /WP=CE19257 /TR=Q9XXP7 /GB=CAA16423.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 51      4grp_total > 11      6grp_cgc > 84      6grp_cgc_sub > 04      6grp_total_sub > Hat      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 165
1 2 3 4 range
A 17.1
(-2.7)
A 		35.3
(-2)
A 		9
(-3)
A 		173.7
(3)
A 		165
B 30
(-0.9)
A 		14.9
(-3)
A 		15.5
(-2.9)
A 		57.1
(3)
A 		42
C 49
(-1.5)
A 		52.7
(-1.4)
A 		12.6
(-3)
A 		160.8
(3)
A 		148
avr 32
(-2) 		34.3
(-1.9) 		12.4
(-3) 		130.5
(3) 		118

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 80
1 2 3 4 5 6 range
A 66.1
(3)
A 		11.8
(-2.2)
A 		56.9
(2.1)
A 		36
(0.1)
A 		13.8
(-2)
A 		3.4
(-3)
A 		63
B 21.1
(-1.8)
A 		50.9
(0.5)
A 		83.5
(3)
A 		72.5
(2.2)
A 		43.5
(-0.1)
A 		5.6
(-3)
A 		78
C 28
(-0.4)
A 		58.5
(2.9)
A 		16.1
(-1.7)
A 		54.2
(2.4)
A 		59.6
(3)
A 		4.3
(-3)
A 		55
avr 38.4
(1.1) 		40.4
(1.3) 		52.2
(2.8) 		54.2
(3) 		39
(1.2) 		4.4
(-3) 		50
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 25
1 2 3 4 range
A 6.2
(-2)
A 		7.7
(-1.6)
A 		2.3
(-3)
A 		25.4
(3)
A 		23
B 9.6
(1.2)
A 		3.7
(-2.9)
A 		3.6
(-3)
A 		12.2
(3)
A 		9
C 16.2
(0.1)
A 		15.2
(-0.1)
A 		4.4
(-3)
A 		27.1
(3)
A 		23
avr 10.7
(-0.6) 		8.9
(-1.2) 		3.4
(-3) 		21.6
(3) 		18

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 20
1 2 3 4 5 6 range
A 12.2
(2.9)
A 		4.2
(-1.2)
A 		12.4
(3)
A 		9.1
(1.3)
A 		4.2
(-1.2)
A 		0.8
(-3)
A 		12
B 7.3
(-1.3)
A 		17
(1.9)
A 		20.3
(3)
A 		19.2
(2.6)
A 		17.7
(2.1)
A 		2.1
(-3)
A 		18
C 10.4
(0)
A 		17.8
(2.5)
A 		4.1
(-2.1)
A 		10.9
(0.2)
A 		19.3
(3)
A 		1.4
(-3)
A 		18
avr 10
(1.2) 		13
(2.7) 		12.3
(2.3) 		13.1
(2.7) 		13.7
(3) 		1.4
(-3) 		12
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179810_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14720
Sequence Type Exemplar sequence
Representative Public ID Y68A4A.6 NCBI
Target Description Y68A4A.6 /REP_DB=WormBase Gene ID /WP=CE19257 /TR=Q9XXP7 /GB=CAA16423.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074955(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074955 NCBI Caenorhabditis elegans Serpentine Receptor, class Z family member (srz-96) (srz-96) mRNA, complete cds. 11/11 None
Y68A4A.6 ENSEMBL cdna:known chromosome:CEL140:V:17201995:17204313:1 gene:Y68A4A.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:17201994-17204313(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol srz-96
Ensembl Y68A4A.6
Entrez Gene 190526 Entrez gene
SwissProt Q9XXP7 EMBL-EBI
WormBase CE19257 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6355 regulation of transcription, DNA-dependent inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5634 nucleus inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3700 transcription factor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA16423 Hypothetical protein Y68A4A.6 [Caenorhabditis elegans] ref|NP_507356.1| Serpentine Receptor, class Z family member (srz-96) [Caenorhabditis elegans] 1.0E-154
blast CAH60765 Hypothetical protein F14F8.13 [Caenorhabditis elegans] ref|NP_001023801.1| Serpentine Receptor, class Z family member (srz-102) [Caenorhabditis elegans] 2.0E-61
blast CAA20970 Hypothetical protein Y102A5C.33 [Caenorhabditis elegans] ref|NP_507299.1| Serpentine Receptor, class Z family member (srz-95) [Caenorhabditis elegans] 7.0E-59
Protein Domains
Database ID Description E-Value
Pfam IPR003845 EMBL-EBI Protein of unknown function DUF216 1.7E-9
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_507356.1 7 20-39,59-81,91-108,115-137,185-207,227-249,259-281
Y68A4A.6 7 20-39,59-81,91-108,115-137,185-207,227-249,259-281
Sequence
Target Sequence 
>C. ELEGANS:179810_AT
ctttcaaataccttttcccattcagaactttgtattcacaaaattcggttcccaagtccg
tcgcatatttttgtgtgtttgttgttttgaaagatttcataccctgtgcatggtcatact
gtaacgaagttcaatgtttgcttggcgaggatatgcgaatttttacagttttttcaaatg
tttatacggtgttgataactgctctaaacgtagtgacttccgtgctaagtccatttattt
atattccaatcatgatggatttaaggaaaaacagggattcacattcccagcaacaaaagt
atctacacaattacatattctttcagagttttttattgctattattcagattgatcagtt
taccatttttgtttcaattggtggtttttgataaactgggaacatttctgatggcaatga
caatagttgatgtggtcactacacctttgataattcaattgtcatacttgaagtgcaatg
tacaaaaagtacttcatttatatgctacatttgattttcacgactttctgaaagttttgt
ttggcaaagtgaacaattctgtgcatcccaac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTTTCAAATACCTTTTCCCATTCAG 433 217 386 Antisense
TCACAAAATTCGGTTCCCAAGTCCG 277 625 421 Antisense
CCCAAGTCCGTCGCATATTTTTGTG 274 257 436 Antisense
GATTTCATACCCTGTGCATGGTCAT 254 427 478 Antisense
GAAGTTCAATGTTTGCTTGGCGAGG 41 337 511 Antisense
ACTGCTCTAAACGTAGTGACTTCCG 585 97 583 Antisense
GTGACTTCCGTGCTAAGTCCATTTA 69 465 598 Antisense
GATTCACATTCCCAGCAACAAAAGT 438 431 661 Antisense
GATTGATCAGTTTACCATTTTTGTT 377 435 734 Antisense
GTTGATGTGGTCACTACACCTTTGA 540 435 811 Antisense
AGTGAACAATTCTGTGCATCCCAAC 532 59 933 Antisense
Sequence Source Affymetrix Proprietary Database