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[179809_s_at]

Description Y65A5A.1 /REP_DB=WormBase Gene ID /WP=CE22718 /TR=Q9XTW5 /GB=CAB07433.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 74      6grp_high1_10_10 > 56      4grp_high_8_8 > 45      6grp_highest_nonorm > 90      6grp_total > 47      4grp_total > 43      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 121
1 2 3 4 range
A 123.4
(-0.4)
P 		97.2
(-3)
A 		143.6
(1.6)
A 		157.6
(3)
P 		60
B 139.7
(-0.9)
P 		184.7
(3)
P 		115.3
(-3)
M 		120.1
(-2.6)
A 		69
C 127.2
(-2.2)
P 		218.2
(3)
A 		157.2
(-0.5)
P 		113.9
(-3)
P 		104
avr 130.1
(-3) 		166.7
(3) 		138.7
(-1.6) 		130.5
(-2.9) 		37

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 91
1 2 3 4 5 6 range
A 146.6
(-0.1)
P 		139.2
(-0.6)
P 		106.1
(-3)
P 		189.9
(3)
P 		105.8
(-3)
P 		187.4
(2.8)
P 		84
B 143.4
(1.8)
P 		129.7
(0.3)
P 		143.9
(1.8)
P 		105.7
(-2.3)
P 		98.8
(-3)
P 		154.6
(3)
P 		56
C 178.9
(3)
P 		142.1
(-0.5)
P 		166.4
(1.8)
P 		140.4
(-0.7)
P 		116.4
(-3)
P 		164.5
(1.6)
P 		63
avr 156.3
(1.8) 		137
(-0.1) 		138.8
(0.1) 		145.3
(0.7) 		107
(-3) 		168.8
(3) 		62
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 44
1 2 3 4 range
A 44.9
(3)
P 		21.1
(-3)
A 		37.5
(1.1)
A 		23.1
(-2.5)
P 		24
B 44.5
(2.7)
P 		45.6
(3)
P 		26.7
(-2.7)
M 		25.6
(-3)
A 		20
C 42.1
(0.2)
P 		62.7
(3)
A 		54.8
(1.9)
P 		19.2
(-3)
P 		44
avr 43.8
(3) 		43.1
(2.8) 		39.7
(1.8) 		22.6
(-3) 		21

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 43
1 2 3 4 5 6 range
A 27
(-2.1)
P 		49.5
(3)
P 		23.1
(-3)
P 		48.2
(2.7)
P 		31.9
(-1)
P 		45.6
(2.1)
P 		26
B 49.9
(1.4)
P 		43.2
(0.1)
P 		35
(-1.6)
P 		28
(-3)
P 		40.1
(-0.5)
P 		57.6
(3)
P 		30
C 66.3
(3)
P 		43.4
(-0.6)
P 		42.4
(-0.8)
P 		28.2
(-3)
P 		37.7
(-1.5)
P 		55.1
(1.2)
P 		38
avr 47.7
(1.4) 		45.4
(0.7) 		33.5
(-3) 		34.8
(-2.6) 		36.6
(-2) 		52.8
(3) 		19
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 179809_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8601
Sequence Type Exemplar sequence
Representative Public ID Y65A5A.1 NCBI
Target Description Y65A5A.1 /REP_DB=WormBase Gene ID /WP=CE22718 /TR=Q9XTW5 /GB=CAB07433.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070551(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070551 NCBI Caenorhabditis elegans Y65A5A.1 (Y65A5A.1) mRNA, complete cds. 11/11 None
GENEFINDER00000022388 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:16398925:16399758:-1 11/11 None
Y65A5A.1 ENSEMBL cdna:known chromosome:CEL140:IV:16398803:16399805:-1 gene:Y65A5A.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:16398930-16399764(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y65A5A.1
Entrez Gene 178456 Entrez gene
SwissProt Q9XTW5 EMBL-EBI
WormBase CE22718 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB07433 Hypothetical protein Y65A5A.1 [Caenorhabditis elegans] ref|NP_502952.1| Y65A5A.1 [Caenorhabditis elegans] 5.0E-52
blast CAE68155 Hypothetical protein CBG13811 [Caenorhabditis briggsae] 4.0E-39
Sequence
Target Sequence 
>C. ELEGANS:179809_S_AT
agaaatatcaagcttccacctcatcccccgtaccaattttaaacgtccaggagcgagttg
agctccgcaagctcgagcaaatgctgccagtgagcccgaagaattgtgatccagcagatg
ttgtgctccgtgcggcttcttatatcgatcaactcgtggcgacggttcaagctcgcgtga
aaaatggaacacttccaatgggtgctctctc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGAAATATCAAGCTTCCACCTCATC 568 71 80 Antisense
TACCAATTTTAAACGTCCAGGAGCG 548 597 110 Antisense
GTCCAGGAGCGAGTTGAGCTCCGCA 410 477 124 Antisense
GTTGAGCTCCGCAAGCTCGAGCAAA 480 437 136 Antisense
CGAGCAAATGCTGCCAGTGAGCCCG 334 251 153 Antisense
GAGCCCGAAGAATTGTGATCCAGCA 31 387 171 Antisense
TCCAGCAGATGTTGTGCTCCGTGCG 302 589 189 Antisense
TCCGTGCGGCTTCTTATATCGATCA 420 595 206 Antisense
ATCGATCAACTCGTGGCGACGGTTC 487 35 223 Antisense
TGGCGACGGTTCAAGCTCGCGTGAA 294 545 236 Antisense
GAACACTTCCAATGGGTGCTCTCTC 537 351 266 Antisense
Sequence Source Affymetrix Proprietary Database