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[179808_at]

Description F42C5.6 /REP_DB=WormBase Gene ID /WP=CE04559 /TR=Q20326 /GB=AAA81483.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 23      4grp_total > 13      6grp_total_sub > Decrease      6grp_rule_based > S1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 125
1 2 3 4 range
A 76.3
(-0.1)
P 		24.9
(-3)
A 		52.2
(-1.4)
A 		130.5
(3)
A 		106
B 105.6
(1.5)
A 		57.8
(-2.3)
A 		49.5
(-3)
A 		124.9
(3)
A 		75
C 115.4
(1.3)
P 		95.2
(0.2)
M 		30.3
(-3)
A 		150.2
(3)
P 		120
avr 99.1
(0.6) 		59.3
(-2) 		44
(-3) 		135.2
(3) 		91

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 127
1 2 3 4 5 6 range
A 71.4
(0.5)
A 		88
(1.4)
P 		117.3
(3)
P 		88.1
(1.4)
M 		50.2
(-0.7)
A 		7.5
(-3)
A 		110
B 124.5
(2.4)
P 		84.5
(-0.1)
P 		134.5
(3)
A 		39.7
(-2.8)
A 		44.5
(-2.5)
A 		37.1
(-3)
A 		97
C 111.8
(2)
P 		129.4
(3)
P 		26.4
(-3)
A 		58.3
(-1.1)
A 		54.1
(-1.4)
A 		30.6
(-2.8)
A 		103
avr 102.6
(3) 		100.6
(2.8) 		92.7
(2.2) 		62
(-0.1) 		49.6
(-1.1) 		25.1
(-3) 		78
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 33
1 2 3 4 range
A 27.8
(3)
P 		5.4
(-3)
A 		13.6
(-0.8)
A 		19.1
(0.7)
A 		22
B 33.7
(3)
A 		14.3
(-2.2)
A 		11.5
(-3)
A 		26.6
(1.1)
A 		22
C 38.2
(3)
P 		27.4
(0.7)
M 		10.6
(-3)
A 		25.3
(0.2)
P 		28
avr 33.2
(3) 		15.7
(-1.9) 		11.9
(-3) 		23.7
(0.3) 		21

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 42
1 2 3 4 5 6 range
A 13.2
(-0.7)
A 		31.3
(3)
P 		25.5
(1.8)
P 		22.3
(1.2)
M 		15.2
(-0.3)
A 		1.8
(-3)
A 		30
B 43.3
(3)
P 		28.1
(0.2)
P 		32.7
(1.1)
A 		10.5
(-3)
A 		18.1
(-1.6)
A 		13.8
(-2.4)
A 		33
C 41.4
(3)
P 		39.5
(2.7)
P 		6.7
(-3)
A 		11.7
(-2.1)
A 		17.5
(-1.1)
A 		10.2
(-2.4)
A 		35
avr 32.6
(2.9) 		33
(3) 		21.6
(0.2) 		14.8
(-1.5) 		16.9
(-1) 		8.6
(-3) 		24
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179808_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8379
Sequence Type Exemplar sequence
Representative Public ID F42C5.6 NCBI
Target Description F42C5.6 /REP_DB=WormBase Gene ID /WP=CE04559 /TR=Q20326 /GB=AAA81483.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068765, NM_068764
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
SNAP00000034680 ENSEMBL cdna:SNAP chromosome:CEL140:IV:7308470:7309041:-1 10/11 None
GENEFINDER00000034688 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:7308470:7311167:-1 10/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_068764 8/11 Cross Hyb Matching Probes None
F42C5.6 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:7308475-7309945(-) 100.0 100.0
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA81483 Hypothetical protein F42C5.6 [Caenorhabditis elegans] ref|NP_501165.2| F42C5.6 [Caenorhabditis elegans] 1.0E-84
blast AAA81483 Hypothetical protein F42C5.6 [Caenorhabditis elegans] ref|NP_501165.2| F42C5.6 [Caenorhabditis elegans] 8.0E-84
blast AAA81484 Ground-like (grd related) protein 4 [Caenorhabditis elegans] ref|NP_501166.2| GRound-Like (grd related) family member (grl-4) [Caenorhabditis elegans] 7.0E-73
blast CAE61854 Hypothetical protein CBG05832 [Caenorhabditis briggsae] 2.0E-68
blast CAE66586 Hypothetical protein CBG11905 [Caenorhabditis briggsae] 2.0E-10
blast CAA95822 Hypothetical protein F52A8.1 [Caenorhabditis elegans] ref|NP_492071.1| F52A8.1 [Caenorhabditis elegans] 7.0E-10
Protein Domains
Database ID Description E-Value
Pfam IPR007284 EMBL-EBI Protein of unknown function DUF398 5.1E-37
Trans Membrane
ID Number Of Domains Domain Boundaries
SNAP00000034680 2 9-31,93-115
GENEFINDER00000034688 2 67-89,390-412
Sequence
Target Sequence 
>C. ELEGANS:179808_AT
tcgtcccccgaagagactcaaacagagggatcaatagggactactactgtggtgaagatt
gaaagtgatgcaatttggtgtccaacacatcgagttggaaatcaatgtcctgaagaaact
cttttatctttttacaaatgttgtggtcatttaaacaaagaatgttgctttcatctgaga
gtctggattgtcataatgataattgttcttccaatctgtctcgttcttcctgcatccact
ttcctaatccgccgaattttgtgctcctcaagtcaacaaccaaccggaagagccccttca
gcagcggatcgtgttcgtcaactagctgcaga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCGTCCCCCGAAGAGACTCAAACAG 582 601 73 Antisense
ACAGAGGGATCAATAGGGACTACTA 129 107 94 Antisense
GGGACTACTACTGTGGTGAAGATTG 606 493 109 Antisense
GATGCAATTTGGTGTCCAACACATC 179 413 139 Antisense
GAATGTTGCTTTCATCTGAGAGTCT 402 331 232 Antisense
GAGAGTCTGGATTGTCATAATGATA 380 395 249 Antisense
TAATTGTTCTTCCAATCTGTCTCGT 78 635 272 Antisense
GAATTTTGTGCTCCTCAAGTCAACA 476 325 326 Antisense
TCAACAACCAACCGGAAGAGCCCCT 580 627 345 Antisense
CTTCAGCAGCGGATCGTGTTCGTCA 567 221 368 Antisense
ATCGTGTTCGTCAACTAGCTGCAGA 449 35 380 Antisense
Sequence Source Affymetrix Proprietary Database