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[179807_at]

Description T20D3.11 /REP_DB=WormBase Gene ID /WP=CE03678 /TR=O01260 /GB=CAA92491.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 30      6grp_high1_10_10 > 24      4grp_highest_8_8 > 59      4grp_high_8_8 > 25      6grp_highest_nonorm > 90      6grp_total > 12      4grp_total > 38      6grp_highest_sub > De      6grp_high1_sub > 02      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 154
1 2 3 4 range
A 197.7
(3)
P 		119.9
(-0.8)
P 		75.5
(-3)
P 		118.9
(-0.9)
P 		122
B 229.9
(3)
P 		130
(-2)
P 		117.8
(-2.6)
P 		110.6
(-3)
P 		119
C 158
(3)
P 		141.1
(0.9)
P 		109.8
(-3)
P 		152.7
(2.3)
P 		48
avr 195.2
(3) 		130.3
(-1.1) 		101
(-3) 		127.4
(-1.3) 		94

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 164
1 2 3 4 5 6 range
A 118.1
(-2.7)
P 		213.8
(3)
P 		162.7
(-0.1)
P 		125.5
(-2.3)
P 		125.3
(-2.3)
P 		113.3
(-3)
P 		101
B 165.9
(1.4)
P 		189.9
(3)
P 		144.1
(-0.1)
P 		166.7
(1.4)
P 		163.2
(1.2)
P 		101.1
(-3)
P 		89
C 250.5
(3)
P 		196.5
(1)
P 		180.4
(0.4)
P 		93.1
(-2.8)
P 		169
(0)
P 		86.4
(-3)
P 		164
avr 178.2
(1.7) 		200.1
(3) 		162.4
(0.7) 		128.4
(-1.3) 		152.5
(0.1) 		100.3
(-3) 		100
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 56
1 2 3 4 range
A 72
(3)
P 		26
(-2.1)
P 		19.7
(-2.7)
P 		17.4
(-3)
P 		55
B 73.3
(3)
P 		32.1
(-2)
P 		27.3
(-2.6)
P 		23.6
(-3)
P 		50
C 52.3
(3)
P 		40.6
(0.4)
P 		38.3
(-0.2)
P 		25.8
(-3)
P 		27
avr 65.9
(3) 		32.9
(-1.5) 		28.4
(-2.2) 		22.3
(-3) 		44

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 74
1 2 3 4 5 6 range
A 21.8
(-3)
P 		76.1
(3)
P 		35.4
(-1.5)
P 		31.8
(-1.9)
P 		37.8
(-1.2)
P 		27.6
(-2.4)
P 		54
B 57.7
(1.4)
P 		63.2
(2.4)
P 		35
(-3)
P 		44.2
(-1.2)
P 		66.3
(3)
P 		37.7
(-2.5)
P 		31
C 92.8
(3)
P 		59.9
(0.3)
P 		45.9
(-0.8)
P 		18.7
(-3)
P 		54.7
(-0.1)
P 		28.9
(-2.2)
P 		74
avr 57.4
(1.5) 		66.4
(3) 		38.8
(-1.7) 		31.6
(-3) 		52.9
(0.7) 		31.4
(-3) 		35
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179807_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9931
Sequence Type Exemplar sequence
Representative Public ID T20D3.11 NCBI
Target Description T20D3.11 /REP_DB=WormBase Gene ID /WP=CE03678 /TR=O01260 /GB=CAA92491.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069246(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069246 NCBI Caenorhabditis elegans T20D3.11 (T20D3.11) mRNA, complete cds. 11/11 None
SNAP00000040164 ENSEMBL cdna:SNAP chromosome:CEL140:IV:9348915:9355962:-1 11/11 None
GENEFINDER00000040167 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:9343714:9355962:-1 11/11 None
T20D3.11 ENSEMBL cdna:known chromosome:CEL140:IV:9351487:9355962:-1 gene:T20D3.11 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:9351492-9355968(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T20D3.11
Entrez Gene 188636 Entrez gene
SwissProt O01260 EMBL-EBI
WormBase CE03678 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA92491 Hypothetical protein T20D3.11 [Caenorhabditis elegans] ref|NP_501647.1| T20D3.11 [Caenorhabditis elegans] 0.0
blast CAE74039 Hypothetical protein CBG21690 [Caenorhabditis briggsae] 0.0
blast CAA92492 Hypothetical protein T20D3.9 [Caenorhabditis elegans] ref|NP_501646.1| T20D3.9 [Caenorhabditis elegans] 0.0
blast CAE74040 Hypothetical protein CBG21691 [Caenorhabditis briggsae] 0.0
blast AAN11153 CG8486-PB, isoform B [Drosophila melanogaster] ref|NP_723354.1| CG8486-PB, isoform B [Drosophila melanogaster] 5.0E-54
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_501647.1 9 235-257,270-292,332-354,443-465,503-525,566-585,589-611,631-653,701-723
T20D3.11 9 235-257,270-292,332-354,443-465,503-525,566-585,589-611,631-653,701-723
SNAP00000040164 8 235-257,270-292,332-354,443-465,503-525,566-585,589-611,631-653
GENEFINDER00000040167 17 235-257,270-292,332-354,443-465,503-525,566-585,589-611,631-653,701-723,1019-1041,1056-1078,1109-1128,1232-1254,1266-1288,1303-1320,1444-1466,1755-1777
Sequence
Target Sequence 
>C. ELEGANS:179807_AT
attgctggaacgtcactttttgctttgggatacattatattcactctgacaatgctgtgg
tctggtaacaatttgtatgtgatgaactcaactctacgatcatttgaacatactttgaaa
cgatggaatgcacttttgggatacacattgttcacgattacaatgaaagtttgccttcaa
atatttggatgtgtattcctgtcgtggttcgatcaatctggtggatggggaaagactctg
tgcatcgttcgtcaactcttcagtatcacatgtgttaataacgaatgtcatgtgctcaaa
gagctggaggatttctcgaaggcgtgtgctgttgagacgaaagaaggaaatattggattt
gatgtgattgcgctatccttcctcgtcttccaaatccgaattttccattcttggtatttc
ca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATTGCTGGAACGTCACTTTTTGCTT 273 7 1762 Antisense
TTCACTCTGACAATGCTGTGGTCTG 526 687 1801 Antisense
GATGAACTCAACTCTACGATCATTT 181 411 1842 Antisense
GGATGTGTATTCCTGTCGTGGTTCG 276 515 1948 Antisense
GTCGTGGTTCGATCAATCTGGTGGA 77 473 1962 Antisense
GAAAGACTCTGTGCATCGTTCGTCA 85 361 1991 Antisense
TCGTTCGTCAACTCTTCAGTATCAC 166 579 2006 Antisense
GGATTTCTCGAAGGCGTGTGCTGTT 326 509 2070 Antisense
TTTGATGTGATTGCGCTATCCTTCC 502 667 2119 Antisense
TTCCTCGTCTTCCAAATCCGAATTT 556 699 2140 Antisense
GAATTTTCCATTCTTGGTATTTCCA 634 323 2159 Antisense
Sequence Source Affymetrix Proprietary Database