[Home] | [Total List]

[179806_at]

Description W05H9.1 /REP_DB=WormBase Gene ID /WP=CE05036 /TR=Q23179 /GB=AAA81726.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 77      6grp_high1_10_10 > 87      4grp_highest_8_8 > 22      4grp_high_8_8 > 06      6grp_highest_nonorm > 69      6grp_total > 77      4grp_total > 02      6grp_highest_sub > Da      6grp_high1_sub > In      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 5533
1 2 3 4 range
A 1712
(-3)
P 		1917.7
(-2.8)
P 		1770
(-2.9)
P 		7244.8
(3)
P 		5533
B 1732.5
(-3)
P 		1729.9
(-3)
P 		1960.5
(-2.7)
P 		6300
(3)
P 		4570
C 1816.1
(-2.9)
P 		1777.2
(-3)
P 		2062.6
(-2.6)
P 		6048.1
(3)
P 		4271
avr 1753.5
(-3) 		1808.3
(-2.9) 		1931
(-2.8) 		6531
(3) 		4778

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 5195
1 2 3 4 5 6 range
A 1555.6
(-2.3)
P 		990.7
(-3)
P 		1509.6
(-2.3)
P 		1904.8
(-1.9)
P 		2657.9
(-0.9)
P 		5767.8
(3)
P 		4777
B 1407.7
(-2.4)
P 		1016.2
(-3)
P 		1599.5
(-2.2)
P 		1997.7
(-1.6)
P 		2555.7
(-0.8)
P 		5276.4
(3)
P 		4260
C 1336.3
(-2.7)
P 		1072.7
(-3)
P 		1583.8
(-2.4)
P 		2042.4
(-1.9)
P 		2732.8
(-1.1)
P 		6186.1
(3)
P 		5113
avr 1433.2
(-2.5) 		1026.5
(-3) 		1564.3
(-2.3) 		1981.6
(-1.8) 		2648.8
(-0.9) 		5743.4
(3) 		4717
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 926
1 2 3 4 range
A 623.3
(-1.1)
P 		416.3
(-3)
P 		462.7
(-2.6)
P 		1060.5
(3)
P 		644
B 552.5
(-2.2)
P 		427.2
(-3)
P 		454.3
(-2.8)
P 		1342.5
(3)
P 		915
C 601.2
(-1.9)
P 		511
(-3)
P 		718.9
(-0.5)
P 		1019.8
(3)
P 		509
avr 592.3
(-1.8) 		451.5
(-3) 		545.3
(-2.2) 		1140.9
(3) 		689

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1784
1 2 3 4 5 6 range
A 286.8
(-3)
P 		352.3
(-2.6)
P 		328.8
(-2.8)
P 		483.1
(-1.9)
P 		802
(-0.2)
P 		1404.3
(3)
P 		1118
B 489.8
(-2.4)
P 		338.2
(-3)
P 		388.4
(-2.8)
P 		529.1
(-2.3)
P 		1038.3
(-0.4)
P 		1967.6
(3)
P 		1629
C 495.3
(-2.4)
P 		327.3
(-3)
P 		403.1
(-2.7)
P 		410.7
(-2.7)
P 		884.3
(-1.1)
P 		2070.9
(3)
P 		1744
avr 424
(-2.7) 		339.3
(-3) 		373.4
(-2.9) 		474.3
(-2.5) 		908.2
(-0.7) 		1814.3
(3) 		1475
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179806_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16257
Sequence Type Exemplar sequence
Representative Public ID W05H9.1 NCBI
Target Description W05H9.1 /REP_DB=WormBase Gene ID /WP=CE05036 /TR=Q23179 /GB=AAA81726.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076649(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076649 NCBI Caenorhabditis elegans W05H9.1 (W05H9.1) mRNA, complete cds. 11/11 None
SNAP00000003212 ENSEMBL cdna:SNAP chromosome:CEL140:X:6273024:6273642:1 10/11 None
GENEFINDER00000003227 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:6273024:6273642:1 10/11 None
W05H9.1.2 ENSEMBL cdna:known chromosome:CEL140:X:6272044:6273700:1 gene:W05H9.1 11/11 None
W05H9.1.1 ENSEMBL cdna:known chromosome:CEL140:X:6272046:6273726:1 gene:W05H9.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:6272046-6273642(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl W05H9.1
Entrez Gene 180901 Entrez gene
SwissProt Q23179 EMBL-EBI
WormBase CE05036 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA81726 Hypothetical protein W05H9.1 [Caenorhabditis elegans] ref|NP_509050.1| W05H9.1 [Caenorhabditis elegans] 1.0E-144
blast CAE61229 Hypothetical protein CBG05028 [Caenorhabditis briggsae] 1.0E-103
blast AAA81726 Hypothetical protein W05H9.1 [Caenorhabditis elegans] ref|NP_509050.1| W05H9.1 [Caenorhabditis elegans] 5.0E-70
blast CAE61229 Hypothetical protein CBG05028 [Caenorhabditis briggsae] 2.0E-44
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_509050.1 1 343-365
W05H9.1.2 1 343-365
W05H9.1.1 1 343-365
SNAP00000003212 1 103-125
GENEFINDER00000003227 1 103-125
Sequence
Target Sequence 
>C. ELEGANS:179806_AT
actgctgaggtgaagcgtcgcgttgacgagaaaaatcaacggcttggcgaacaaagagaa
aatcatgaagctttaaagcaacagatcaatgataaacttgctgatattgagcagcagggg
aagaatgttggtgatcaggcaaaaacatatgagcagaagaaggatgaactttcggatctt
attcaggatctaatcgggcaaggtgttaaggataagatggccaaccaaatttcggacaag
cttcagggtcaacttgacaaggcagccttgaaagaagttttgaacgagaagaaagttgaa
caagctggagccccaccaccggttaatgagatccccgttgatattgctccgaaagcaaca
attcttgacgaaatcaccggaaaagctgcatgggagactgtaacctgggttcttcttgct
ctgtgcatccttctttcaatcgccttaatcattatcattgtttatcaagtcaaacaacgc
tctgtctacgaacggctcgacggcaacaaccaggtttacaatccaacatcagaaagagcc
ccacttcttccaccaccagcaactccaataactgc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACTGCTGAGGTGAAGCGTCGCGTTG 135 99 643 Antisense
GATGGCCAACCAAATTTCGGACAAG 509 403 858 Antisense
TTCGGACAAGCTTCAGGGTCAACTT 544 687 873 Antisense
CCACCACCGGTTAATGAGATCCCCG 431 273 955 Antisense
TGAGATCCCCGTTGATATTGCTCCG 222 569 969 Antisense
AAAGCTGCATGGGAGACTGTAACCT 204 125 1024 Antisense
ACTGTAACCTGGGTTCTTCTTGCTC 69 97 1039 Antisense
CTTCTTTCAATCGCCTTAATCATTA 370 221 1072 Antisense
GTCAAACAACGCTCTGTCTACGAAC 127 465 1111 Antisense
CTCGACGGCAACAACCAGGTTTACA 173 233 1138 Antisense
CACCACCAGCAACTCCAATAACTGC 190 203 1193 Antisense
Sequence Source Affymetrix Proprietary Database