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[179805_s_at]

Description T04G9.7 /REP_DB=WormBase Gene ID /WP=CE23947 /TR=Q9TXQ6 /GB=AAD50511.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 99      4grp_total > 02      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 357
1 2 3 4 range
A 45.7
(-2.4)
M 		8.6
(-3)
A 		58.6
(-2.2)
A 		365.1
(3)
P 		357
B 58.4
(-2.3)
A 		27.9
(-3)
A 		42.7
(-2.6)
A 		272.9
(3)
P 		245
C 42.4
(-2.7)
A 		71.7
(-1.9)
A 		29.8
(-3)
A 		263.6
(3)
P 		234
avr 48.8
(-2.7) 		36.1
(-3) 		43.7
(-2.8) 		300.5
(3) 		264

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2000
1 2 3 4 5 6 range
A 64.1
(-2.9)
A 		36.5
(-3)
A 		66.3
(-2.9)
A 		61.8
(-2.9)
P 		1748.9
(3)
P 		1607.1
(2.5)
P 		1712
B 49.4
(-3)
P 		34.4
(-3)
A 		43.2
(-3)
A 		66.6
(-2.9)
A 		1889.4
(3)
P 		1636.9
(2.2)
P 		1855
C 4.6
(-3)
A 		53
(-2.9)
P 		24.1
(-2.9)
A 		96.3
(-2.7)
A 		1592
(1.8)
P 		2004.1
(3)
P 		2000
avr 39.4
(-3) 		41.3
(-3) 		44.5
(-3) 		74.9
(-2.9) 		1743.4
(3) 		1749.4
(3) 		1710
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 56
1 2 3 4 range
A 16.7
(-1.3)
M 		1.9
(-3)
A 		15.3
(-1.4)
A 		53.4
(3)
P 		52
B 18.6
(-1.6)
A 		6.9
(-3)
A 		9.9
(-2.6)
A 		58.1
(3)
P 		51
C 14
(-2.4)
A 		20.6
(-1.2)
A 		10.4
(-3)
A 		44.4
(3)
P 		34
avr 16.4
(-2.1) 		9.8
(-3) 		11.9
(-2.7) 		52
(3) 		42

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 766
1 2 3 4 5 6 range
A 11.8
(-3)
A 		13
(-3)
A 		14.4
(-3)
A 		15.7
(-3)
P 		527.7
(3)
P 		391.3
(1.4)
P 		516
B 17.2
(-2.9)
P 		11.5
(-3)
A 		10.5
(-3)
A 		17.6
(-2.9)
A 		767.6
(3)
P 		610.4
(1.8)
P 		757
C 1.7
(-3)
A 		16.2
(-2.9)
P 		6.1
(-3)
A 		19.4
(-2.8)
A 		515.1
(1.6)
P 		670.9
(3)
P 		669
avr 10.2
(-3) 		13.6
(-3) 		10.3
(-3) 		17.6
(-2.9) 		603.5
(3) 		557.5
(2.5) 		593
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 179805_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18237
Sequence Type Exemplar sequence
Representative Public ID T04G9.7 NCBI
Target Description T04G9.7 /REP_DB=WormBase Gene ID /WP=CE23947 /TR=Q9TXQ6 /GB=AAD50511.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075751(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075751 NCBI Caenorhabditis elegans T04G9.7 (T04G9.7) mRNA, complete cds. 11/11 None
SNAP00000034733 ENSEMBL cdna:SNAP chromosome:CEL140:X:770845:774655:1 11/11 None
GENEFINDER00000034742 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:770845:771831:1 11/11 None
T04G9.7 ENSEMBL cdna:known chromosome:CEL140:X:770845:771839:1 gene:T04G9.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:770944-771831(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T04G9.7
Entrez Gene 180424 Entrez gene
SwissProt Q9TXQ6 EMBL-EBI
WormBase CE30161 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_508153 T04G9.4 [Caenorhabditis elegans] gb|AAA82460.1| Hypothetical protein T04G9.4 [Caenorhabditis elegans] 1.0E-138
blast CAE63623 Hypothetical protein CBG08117 [Caenorhabditis briggsae] 1.0E-130
blast NP_508152 T04G9.7 [Caenorhabditis elegans] gb|AAD50511.2| Hypothetical protein T04G9.7 [Caenorhabditis elegans] 3.0E-45
blast H89450 protein T04G9.3 [imported] - Caenorhabditis elegans 2.0E-44
blast CAE75502 Hypothetical protein CBG23511 [Caenorhabditis briggsae] 2.0E-39
blast CAE63624 Hypothetical protein CBG08118 [Caenorhabditis briggsae] 5.0E-21
Protein Domains
Database ID Description E-Value
Pfam IPR008278 EMBL-EBI 4-phosphopantetheinyl transferase 9.8E-22
Sequence
Target Sequence 
>C. ELEGANS:179805_S_AT
gagagttcgcagccaacaagcattgactactactccatcttcagaagagcacgaggatca
tgaaagtcatgaaatgcctgatatgcctgttaagaaggacgaagtgatgggaagcatgga
tacgttgtcgtcgcttgcaaaagttcaaagagatcaagccgagacattccgcatgtggtc
aactcagttccgtactttcaaatccagcgttatgaagtacatggaacaatccagcgattt
gcttcaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGAGTTCGCAGCCAACAAGCATTG 425 395 51 Antisense
ACAAGCATTGACTACTACTCCATCT 91 113 66 Antisense
TGACTACTACTCCATCTTCAGAAGA 507 571 74 Antisense
AGAGCACGAGGATCATGAAAGTCAT 133 69 96 Antisense
GAAATGCCTGATATGCCTGTTAAGA 396 361 121 Antisense
GGGAAGCATGGATACGTTGTCGTCG 517 493 159 Antisense
GTTGTCGTCGCTTGCAAAAGTTCAA 423 437 174 Antisense
GAGACATTCCGCATGTGGTCAACTC 336 393 211 Antisense
TGGTCAACTCAGTTCCGTACTTTCA 387 545 226 Antisense
TTCCGTACTTTCAAATCCAGCGTTA 275 695 238 Antisense
GGAACAATCCAGCGATTTGCTTCAA 332 529 273 Antisense
Sequence Source Affymetrix Proprietary Database