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[179804_s_at]

Description F49E7.2 /REP_DB=WormBase Gene ID /WP=CE10784 /TR=Q9GYH8 /GB=AAF98623.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 05      6grp_high1_10_10 > 21      4grp_highest_8_8 > 04      4grp_high_8_8 > 37      6grp_highest_nonorm > 62      6grp_total > 41      4grp_total > 34      6grp_highest_sub > 03_04      6grp_high1_sub > 03      6grp_total_sub > Hat      6grp_rule_based > S3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 316
1 2 3 4 range
A 547.4
(3)
P 		524.9
(-0.9)
P 		513.1
(-3)
P 		525.4
(-0.8)
P 		34
B 382
(-3)
P 		698.2
(3)
P 		496.2
(-0.8)
P 		569.2
(0.6)
P 		316
C 391.3
(-3)
P 		633.3
(3)
P 		581
(1.7)
P 		561.6
(1.2)
P 		242
avr 440.2
(-3) 		618.8
(3) 		530.1
(0) 		552.1
(0.8) 		179

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 601
1 2 3 4 5 6 range
A 428.3
(-2.2)
P 		497.5
(-1.3)
P 		827
(3)
P 		607.9
(0.1)
P 		377.9
(-2.9)
P 		370.8
(-3)
P 		456
B 472.9
(0.7)
P 		572.4
(3)
P 		508.6
(1.6)
P 		530.4
(2)
P 		361.1
(-1.8)
P 		308
(-3)
P 		264
C 598.7
(2.8)
P 		610.2
(3)
P 		531.7
(1.8)
P 		564.8
(2.3)
P 		377.9
(-0.6)
P 		226.5
(-3)
P 		384
avr 500
(0.7) 		560
(1.8) 		622.4
(3) 		567.7
(2) 		372.3
(-1.7) 		301.8
(-3) 		321
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 126
1 2 3 4 range
A 199.3
(3)
P 		113.9
(-1.2)
P 		134.1
(-0.2)
P 		76.9
(-3)
P 		122
B 121.8
(-2.3)
P 		172.4
(3)
P 		115
(-3)
P 		121.3
(-2.3)
P 		57
C 129.5
(-1.1)
P 		182.1
(1.9)
P 		202.5
(3)
P 		94.7
(-3)
P 		108
avr 150.2
(2.4) 		156.1
(3) 		150.5
(2.4) 		97.6
(-3) 		59

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 146
1 2 3 4 5 6 range
A 79
(-3)
P 		176.9
(2.8)
P 		180.1
(3)
P 		154.2
(1.5)
P 		114
(-0.9)
P 		90.3
(-2.3)
P 		101
B 164.5
(0.9)
P 		190.5
(3)
P 		123.5
(-2.3)
P 		140.5
(-1)
P 		146.7
(-0.5)
P 		114.9
(-3)
P 		76
C 221.9
(3)
P 		186.2
(1.5)
P 		135.3
(-0.6)
P 		113.6
(-1.4)
P 		122.3
(-1.1)
P 		75.8
(-3)
P 		146
avr 155.1
(1.1) 		184.5
(3) 		146.3
(0.5) 		136.1
(-0.2) 		127.7
(-0.8) 		93.7
(-3) 		91
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 179804_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18566
Sequence Type Exemplar sequence
Representative Public ID F49E7.2 NCBI
Target Description F49E7.2 /REP_DB=WormBase Gene ID /WP=CE10784 /TR=Q9GYH8 /GB=AAF98623.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075806(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075806 NCBI Caenorhabditis elegans F49E7.2 (F49E7.2) mRNA, complete cds. 11/11 None
GENEFINDER00000038412 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:1094808:1097001:-1 11/11 None
F49E7.2 ENSEMBL cdna:known chromosome:CEL140:X:1095560:1097010:-1 gene:F49E7.2 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000038409 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:1095559-1097010(-) 97.54 100.0
Public Domain and Genome References
Gene Title
Ensembl F49E7.2
Entrez Gene 180462 Entrez gene
SwissProt Q9GYH8 EMBL-EBI
WormBase CE10784 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF98623 Hypothetical protein F49E7.2 [Caenorhabditis elegans] ref|NP_508207.1| F49E7.2 [Caenorhabditis elegans] 1.0E-135
blast AAF98623 Hypothetical protein F49E7.2 [Caenorhabditis elegans] ref|NP_508207.1| F49E7.2 [Caenorhabditis elegans] 1.0E-128
blast CAE60510 Hypothetical protein CBG04129 [Caenorhabditis briggsae] 1.0E-39
blast CAE60510 Hypothetical protein CBG04129 [Caenorhabditis briggsae] 2.0E-39
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_508207.1 1 32-51
F49E7.2 1 32-51
GENEFINDER00000038412 2 29-48,219-239
Sequence
Target Sequence 
>C. ELEGANS:179804_S_AT
gaactgaaactacctgcattcattcaaactcaatccagaattcctcaatgccgaattctc
tacaaaatcgagattccggaaggtgtctatgttgatgaaagagagttacaaagtgcaagg
tttggctatgattttatagttttaccggtaaagaaaaccaattcacaaatgctctttgcc
atcaagaaaaagctttacctatcaacatttgagatgaagaatcttctaaaaatcaagata
catttacatccgccgagtaaagctttcccaaagtctctaaaattccctgttccaacaatt
gctgtagactgcaaaggggatttgttcaaaggttgcacaacacttaaaacttctcgtgat
ctcaggctaaaatcagaatctcccaactggttgtcagttaagagcccaagcagagctcct
gtggaattggaaacgttccgagacgaacaactttttgcagatttcggatatgaatcgtgt
tttttgctggttacta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAACTGAAACTACCTGCATTCATTC 113 349 214 Antisense
TTCCTCAATGCCGAATTCTCTACAA 169 701 254 Antisense
GATTCCGGAAGGTGTCTATGTTGAT 119 433 285 Antisense
CACAAATGCTCTTTGCCATCAAGAA 424 195 377 Antisense
AAGATACATTTACATCCGCCGAGTA 495 153 448 Antisense
GAGTAAAGCTTTCCCAAAGTCTCTA 666 399 468 Antisense
TCTCTAAAATTCCCTGTTCCAACAA 438 611 487 Antisense
AAAACTTCTCGTGATCTCAGGCTAA 220 131 559 Antisense
ATCAGAATCTCCCAACTGGTTGTCA 578 25 585 Antisense
AGCCCAAGCAGAGCTCCTGTGGAAT 312 83 616 Antisense
GAATCGTGTTTTTTGCTGGTTACTA 427 327 685 Antisense
Sequence Source Affymetrix Proprietary Database