[Home] | [Total List]

[179802_at]

Description Y54E2A.2 /REP_DB=WormBase Gene ID /WP=CE20301 /TR=Q9XWJ1 /GB=CAA21676.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 49      4grp_high_8_8 > 44      6grp_total > 59      4grp_total > 52      6grp_high1_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 70
1 2 3 4 range
A 103.5
(-1.5)
P 		142.5
(3)
P 		113.4
(-0.4)
P 		90.9
(-3)
P 		52
B 95.6
(3)
P 		84.2
(0)
P 		77.1
(-1.8)
M 		72.7
(-3)
P 		23
C 103.3
(3)
P 		102.2
(2.8)
P 		88.6
(-0)
P 		74
(-3)
P 		29
avr 100.8
(1.3) 		109.6
(3) 		93
(-0.3) 		79.2
(-3) 		30

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 97
1 2 3 4 5 6 range
A 77.3
(-1.5)
P 		59
(-3)
P 		59.8
(-2.9)
P 		89.3
(-0.5)
P 		75.5
(-1.7)
P 		133
(3)
P 		74
B 73.3
(-2.3)
P 		95.7
(3)
P 		92.8
(2.3)
P 		74.8
(-2)
P 		76.5
(-1.6)
P 		70.5
(-3)
P 		25
C 156
(3)
P 		81.6
(-2.9)
A 		80.9
(-3)
P 		107.3
(-0.9)
P 		125.9
(0.6)
P 		104.3
(-1.1)
P 		75
avr 102.2
(2.9) 		78.8
(-2.8) 		77.8
(-3) 		90.5
(0.1) 		92.6
(0.6) 		102.6
(3) 		25
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 25
1 2 3 4 range
A 37.7
(3)
P 		30.9
(1.3)
P 		29.6
(1)
P 		13.3
(-3)
P 		24
B 30.5
(3)
P 		20.8
(-0.9)
P 		17.9
(-2)
M 		15.5
(-3)
P 		15
C 34.2
(3)
P 		29.4
(1.7)
P 		30.9
(2.1)
P 		12.5
(-3)
P 		22
avr 34.1
(3) 		27
(0.9) 		26.1
(0.6) 		13.8
(-3) 		20

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 45
1 2 3 4 5 6 range
A 14.3
(-2.6)
P 		21
(-0.5)
P 		13
(-3)
P 		22.6
(-0)
P 		22.8
(0)
P 		32.4
(3)
P 		19
B 25.5
(-0.2)
P 		31.8
(3)
P 		22.5
(-1.7)
P 		19.8
(-3)
P 		31.1
(2.7)
P 		26.3
(0.3)
P 		12
C 57.8
(3)
P 		24.9
(-2.3)
A 		20.6
(-3)
P 		21.6
(-2.8)
P 		40.7
(0.2)
P 		34.9
(-0.7)
P 		37
avr 32.5
(3) 		25.9
(0.1) 		18.7
(-3) 		21.3
(-1.9) 		31.5
(2.6) 		31.2
(2.4) 		14
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179802_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3946
Sequence Type Exemplar sequence
Representative Public ID Y54E2A.2 NCBI
Target Description Y54E2A.2 /REP_DB=WormBase Gene ID /WP=CE20301 /TR=Q9XWJ1 /GB=CAA21676.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064657(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064657 NCBI Caenorhabditis elegans Y54E2A.2 (Y54E2A.2) mRNA, complete cds. 11/11 None
SNAP00000025429 ENSEMBL cdna:SNAP chromosome:CEL140:II:14747799:14752379:-1 11/11 None
GENEFINDER00000025442 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:14747799:14752379:-1 11/11 None
Y54E2A.2 ENSEMBL cdna:known chromosome:CEL140:II:14747799:14752379:-1 gene:Y54E2A.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:14747795-14752376(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y54E2A.2
Entrez Gene 175132 Entrez gene
SwissProt Q9XWJ1 EMBL-EBI
WormBase CE20301 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA21676 Hypothetical protein Y54E2A.2 [Caenorhabditis elegans] ref|NP_497058.1| Y54E2A.2 [Caenorhabditis elegans] 0.0
blast CAE60618 Hypothetical protein CBG04259 [Caenorhabditis briggsae] 1.0E-138
blast XP_780386 PREDICTED: similar to gluconokinase like (43.8 kD) (2P34) [Strongylocentrotus purpuratus] 6.0E-16
Sequence
Target Sequence 
>C. ELEGANS:179802_AT
tcctgctctacgtcagtcatacggtactcgtcgtttccgaaacacattacgataaagtca
tcattgacacgttgagggttgccgaacaaattcgaccgtatcttgcaatttttcgtccga
aacttgcgattgataggaagaccaatttagtattcatcaaaacgaaggcgagctcaatcg
acctggcgcctacagtaatccgggaacgggaagagcttcttcgactaagtttccaagatt
ctcgatggctgaaagtctctcaggaaccctttaaaacgctgatagtcctggaagagattc
gtgtccggcgtgagcatttgtttgaggagggcgatgagcctgacgaggctgcctcgctta
atgaatttgacgaacaaatcgcagagttacgagaggaattgcaaaagaatcgagaggatt
ttacagtggaaactgcggcgatggatgagaagaaatggctcgacatgtgccgagaagtga
tacgagacaagacgttgcacaaaacactcaaagaatatcaacgagcaatgaccgacggtg
tccgcacacattttgacaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCCTGCTCTACGTCAGTCATACGGT 207 593 569 Antisense
GTCATACGGTACTCGTCGTTTCCGA 280 457 584 Antisense
CGTATCTTGCAATTTTTCGTCCGAA 371 247 665 Antisense
ACGAAGGCGAGCTCAATCGACCTGG 698 91 730 Antisense
GAGCTTCTTCGACTAAGTTTCCAAG 558 387 781 Antisense
GCTGAAAGTCTCTCAGGAACCCTTT 21 295 816 Antisense
TCGTGTCCGGCGTGAGCATTTGTTT 35 607 867 Antisense
GCGATGAGCCTGACGAGGCTGCCTC 144 291 899 Antisense
GGCTGCCTCGCTTAATGAATTTGAC 115 541 915 Antisense
CAACGAGCAATGACCGACGGTGTCC 462 187 1087 Antisense
ACGGTGTCCGCACACATTTTGACAA 396 89 1103 Antisense
Sequence Source Affymetrix Proprietary Database