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[179801_at]

Description T24C4.3 /REP_DB=WormBase Gene ID /WP=CE19594 /TR=Q9TZ36 /GB=AAC68922.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 34      4grp_total > 30      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 145
1 2 3 4 range
A 147.7
(3)
A 		63.7
(-0.5)
A 		3
(-3)
A 		139
(2.6)
A 		145
B 111.2
(3)
A 		55.3
(-0.1)
A 		4.6
(-3)
A 		60.1
(0.1)
A 		107
C 113.3
(3)
A 		61.3
(-1.7)
A 		46.3
(-3)
A 		77.2
(-0.2)
A 		67
avr 124.1
(3) 		60.1
(-0.6) 		18
(-3) 		92.1
(1.2) 		106

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 80
1 2 3 4 5 6 range
A 83.6
(2.8)
A 		75.7
(2.2)
A 		62.4
(1.2)
A 		53.4
(0.5)
A 		85.8
(3)
A 		9.3
(-3)
A 		77
B 81.4
(2.6)
A 		86.5
(3)
A 		80
(2.5)
A 		9.8
(-3)
A 		39.9
(-0.6)
A 		25
(-1.8)
A 		77
C 88.4
(2.9)
A 		84.5
(2.6)
A 		89.2
(3)
A 		9.5
(-3)
A 		34.4
(-1.1)
A 		29.9
(-1.5)
A 		80
avr 84.5
(3) 		82.2
(2.8) 		77.2
(2.3) 		24.2
(-2.7) 		53.4
(0) 		21.4
(-3) 		63
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 53
1 2 3 4 range
A 53.8
(3)
A 		13.8
(-1.5)
A 		0.8
(-3)
A 		20.3
(-0.8)
A 		53
B 35.5
(3)
A 		13.6
(-0.8)
A 		1.1
(-3)
A 		12.8
(-1)
A 		34
C 37.5
(3)
A 		17.6
(-1.9)
A 		16.1
(-2.2)
A 		13
(-3)
A 		25
avr 42.3
(3) 		15
(-1.5) 		6
(-3) 		15.4
(-1.4) 		36

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 31
1 2 3 4 5 6 range
A 15.4
(0.2)
A 		26.9
(3)
A 		13.6
(-0.2)
A 		13.5
(-0.3)
A 		25.9
(2.8)
A 		2.3
(-3)
A 		25
B 28.3
(2.9)
A 		28.8
(3)
A 		19.4
(0.8)
A 		2.6
(-3)
A 		16.2
(0.1)
A 		9.3
(-1.5)
A 		26
C 32.8
(3)
A 		25.8
(1.6)
A 		22.7
(1)
A 		1.9
(-3)
A 		11.1
(-1.2)
A 		10
(-1.4)
A 		31
avr 25.5
(2.5) 		27.2
(3) 		18.6
(0.6) 		6
(-3) 		17.7
(0.3) 		7.2
(-2.7) 		21
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179801_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8354
Sequence Type Exemplar sequence
Representative Public ID T24C4.3 NCBI
Target Description T24C4.3 /REP_DB=WormBase Gene ID /WP=CE19594 /TR=Q9TZ36 /GB=AAC68922.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064880(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064880 NCBI Caenorhabditis elegans T24C4.3 (T24C4.3) mRNA, complete cds. 11/11 None
SNAP00000044713 ENSEMBL cdna:SNAP chromosome:CEL140:III:871770:872372:-1 11/11 None
GENEFINDER00000044730 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:871770:872372:-1 11/11 None
T24C4.3 ENSEMBL cdna:known chromosome:CEL140:III:871770:872372:-1 gene:T24C4.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:871769-872372(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T24C4.3
Entrez Gene 188844 Entrez gene
SwissProt Q9TZ36 EMBL-EBI
WormBase CE19594 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC68922 Hypothetical protein T24C4.3 [Caenorhabditis elegans] ref|NP_497281.1| T24C4.3 [Caenorhabditis elegans] 2.0E-89
blast CAE56480 Hypothetical protein CBG24194 [Caenorhabditis briggsae] 9.0E-70
Sequence
Target Sequence 
>C. ELEGANS:179801_AT
gagtgacccaaaggcagtttatcaagaccattttgtttcagttcgtccagattgccttgt
ggtaaaaaagtactttattccgtcaatgctaccgtttgaatttcattgggataaaattga
gacgatgacttacctaccccaaaacaatgagaataagctattggtacctaatagaggaca
ggaccaagaaggacggtggtgggcgacagatgttttacgacctcatgaaagagaactgca
tttgtacaacgttcgaattgacgtggcagacacggaaccttcaaagtctggatttacagt
gattcacattgaccagtttctaaaatcgtgccgacatctgttaccg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGTGACCCAAAGGCAGTTTATCAA 296 401 96 Antisense
CAGTTCGTCCAGATTGCCTTGTGGT 411 205 134 Antisense
TACTTTATTCCGTCAATGCTACCGT 257 645 166 Antisense
AATTGAGACGATGACTTACCTACCC 700 175 210 Antisense
GAAGGACGGTGGTGGGCGACAGATG 162 333 283 Antisense
GCGACAGATGTTTTACGACCTCATG 440 289 298 Antisense
GACGTGGCAGACACGGAACCTTCAA 105 375 355 Antisense
GAACCTTCAAAGTCTGGATTTACAG 153 345 370 Antisense
ACAGTGATTCACATTGACCAGTTTC 276 107 391 Antisense
GACCAGTTTCTAAAATCGTGCCGAC 408 383 406 Antisense
AAAATCGTGCCGACATCTGTTACCG 441 131 417 Antisense
Sequence Source Affymetrix Proprietary Database