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[179800_at]

Description F10C1.3 /REP_DB=WormBase Gene ID /WP=CE02620 /TR=Q19288 /GB=AAA93406.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 93      4grp_total > 35      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 9
1 2 3 4 range
A 2
(-2.6)
A 		1.9
(-3)
A 		1.9
(-3)
A 		3.4
(3)
A 		2
B 0.8
(-3)
A 		9.3
(3)
A 		2.2
(-2)
A 		1.4
(-2.6)
A 		9
C 1.8
(-2.4)
A 		2.4
(-1.3)
A 		1.5
(-3)
A 		4.6
(3)
A 		3
avr 1.5
(-3) 		4.5
(3) 		1.9
(-2.2) 		3.1
(0.2) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 16
1 2 3 4 5 6 range
A 4.3
(-1.7)
A 		1.4
(-2.8)
A 		0.9
(-3)
A 		2.2
(-2.5)
A 		16.9
(3)
A 		2.9
(-2.3)
A 		16
B 1.9
(-3)
A 		2.9
(0.3)
A 		3.6
(2.7)
A 		2
(-2.7)
A 		2.3
(-1.7)
A 		3.7
(3)
A 		2
C 1.4
(-2.5)
A 		3.1
(2.2)
A 		3.4
(3)
A 		1.5
(-2.2)
A 		2.1
(-0.5)
A 		1.2
(-3)
A 		2
avr 2.5
(-2.3) 		2.5
(-2.3) 		2.6
(-2.2) 		1.9
(-3) 		7.1
(3) 		2.6
(-2.2) 		5
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2
1 2 3 4 range
A 0.7
(3)
A 		0.4
(-3)
A 		0.5
(-1)
A 		0.5
(-1)
A 		0
B 0.3
(-3)
A 		2.3
(3)
A 		0.5
(-2.4)
A 		0.3
(-3)
A 		2
C 0.6
(-1)
A 		0.7
(1)
A 		0.5
(-3)
A 		0.8
(3)
A 		0
avr 0.5
(-3) 		1.1
(3) 		0.5
(-3) 		0.5
(-3) 		1

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 5
1 2 3 4 5 6 range
A 0.8
(-2.3)
A 		0.5
(-2.6)
A 		0.2
(-3)
A 		0.6
(-2.5)
A 		5.1
(3)
A 		0.7
(-2.4)
A 		5
B 0.7
(-1.7)
A 		1
(0.3)
A 		0.9
(-0.3)
A 		0.5
(-3)
A 		0.9
(-0.3)
A 		1.4
(3)
A 		1
C 0.5
(-1)
A 		0.9
(3)
A 		0.9
(3)
A 		0.3
(-3)
A 		0.7
(1)
A 		0.4
(-2)
A 		1
avr 0.7
(-2.3) 		0.8
(-1.9) 		0.7
(-2.3) 		0.5
(-3) 		2.2
(3) 		0.8
(-1.9) 		2
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179800_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5437
Sequence Type Exemplar sequence
Representative Public ID F10C1.3 NCBI
Target Description F10C1.3 /REP_DB=WormBase Gene ID /WP=CE02620 /TR=Q19288 /GB=AAA93406.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062734(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062734 NCBI Caenorhabditis elegans F10C1.3 (F10C1.3) mRNA, complete cds. 11/11 None
SNAP00000018697 ENSEMBL cdna:SNAP chromosome:CEL140:II:5756981:5758386:-1 11/11 None
GENEFINDER00000018708 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:5756981:5758386:-1 11/11 None
F10C1.3 ENSEMBL cdna:known chromosome:CEL140:II:5756914:5758386:-1 gene:F10C1.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:5756977-5758383(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F10C1.3
Entrez Gene 173975 Entrez gene
SwissProt Q19288 EMBL-EBI
WormBase CE02620 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_495135 F10C1.3 [Caenorhabditis elegans] gb|AAA93406.1| Hypothetical protein F10C1.3 [Caenorhabditis elegans] 4.0E-40
blast NP_495135 F10C1.3 [Caenorhabditis elegans] gb|AAA93406.1| Hypothetical protein F10C1.3 [Caenorhabditis elegans] 3.0E-36
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000018708 1 74-96
Sequence
Target Sequence 
>C. ELEGANS:179800_AT
gctctataaccttgcagtttttgacttttcaatggttctaaatcgaatccacgctttact
cgtgacatgcatacaatgtctcacaatcagtgagcacagtggactcatcgctatcgagga
tcgggatacgggcaccacaaaacggtcattcacaagagttccgagtagcgatgcccttgc
tgttaccgtcttaccggccgtggcaatcttctgtggaggaaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCTCTATAACCTTGCAGTTTTTGAC 147 299 15 Antisense
TTGACTTTTCAATGGTTCTAAATCG 538 701 35 Antisense
TAAATCGAATCCACGCTTTACTCGT 521 639 53 Antisense
CGCTTTACTCGTGACATGCATACAA 466 255 66 Antisense
ATGCATACAATGTCTCACAATCAGT 624 43 81 Antisense
CAGTGAGCACAGTGGACTCATCGCT 561 207 102 Antisense
GACTCATCGCTATCGAGGATCGGGA 348 373 116 Antisense
GATCGGGATACGGGCACCACAAAAC 310 417 133 Antisense
GGGCACCACAAAACGGTCATTCACA 695 493 144 Antisense
CAAGAGTTCCGAGTAGCGATGCCCT 262 185 167 Antisense
CCGTGGCAATCTTCTGTGGAGGAAA 329 265 212 Antisense
Sequence Source Affymetrix Proprietary Database