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[179799_s_at]

Description F27D9.6 /REP_DB=WormBase Gene ID /WP=CE28011 /TR=Q19843 /GB=AAK68350.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 01      6grp_high1_10_10 > 10      4grp_highest_8_8 > 03      4grp_high_8_8 > 47      6grp_highest_nonorm > 42      6grp_total > 50      4grp_total > 41      6grp_cgc > 94      6grp_cgc_sub > 04      6grp_total_sub > Hat      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 524
1 2 3 4 range
A 456
(-3)
P 		908.5
(2.7)
P 		928.9
(3)
P 		569.2
(-1.6)
P 		473
B 439.5
(-3)
P 		838
(3)
P 		833.6
(2.9)
P 		698.8
(0.9)
P 		399
C 422.2
(-3)
P 		946.6
(3)
P 		936.4
(2.9)
P 		699.3
(0.2)
P 		524
avr 439.2
(-3) 		897.7
(3) 		899.6
(3) 		655.8
(-0.2) 		460

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 699
1 2 3 4 5 6 range
A 972.1
(1.3)
P 		717.4
(-1.4)
P 		840.3
(-0.1)
P 		1140.6
(3)
P 		561.2
(-3)
P 		574.2
(-2.9)
P 		579
B 919.2
(3)
P 		680.1
(-0.5)
P 		749.8
(0.5)
P 		852.8
(2)
P 		608
(-1.6)
P 		512.1
(-3)
P 		407
C 889.6
(1.6)
P 		658.1
(-0.8)
P 		991.9
(2.6)
P 		1031.8
(3)
P 		562.9
(-1.8)
P 		441.3
(-3)
P 		591
avr 927
(2) 		685.2
(-0.9) 		860.7
(1.2) 		1008.4
(3) 		577.4
(-2.2) 		509.2
(-3) 		499
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 243
1 2 3 4 range
A 166
(0.1)
P 		197.2
(1.3)
P 		242.8
(3)
P 		83.3
(-3)
P 		160
B 140.1
(-3)
P 		207
(3)
P 		193.2
(1.8)
P 		148.9
(-2.2)
P 		67
C 139.7
(-2.4)
P 		272.1
(1.4)
P 		326.4
(3)
P 		117.9
(-3)
P 		209
avr 148.6
(-1.6) 		225.4
(1.7) 		254.1
(3) 		116.7
(-3) 		137

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 190
1 2 3 4 5 6 range
A 179.2
(-1.4)
P 		255.1
(1.6)
P 		183
(-1.3)
P 		289.3
(3)
P 		169.4
(-1.8)
P 		139.8
(-3)
P 		150
B 319.8
(3)
P 		226.4
(-1.1)
P 		182.1
(-3)
P 		225.9
(-1.1)
P 		247
(-0.2)
P 		190.9
(-2.6)
P 		138
C 329.8
(3)
P 		200.8
(-1.3)
P 		252.5
(0.5)
P 		207.5
(-1)
P 		182.2
(-1.9)
P 		147.7
(-3)
P 		182
avr 276.3
(3) 		227.4
(0.5) 		205.9
(-0.6) 		240.9
(1.2) 		199.5
(-0.9) 		159.5
(-3) 		117
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 179799_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17059
Sequence Type Exemplar sequence
Representative Public ID F27D9.6 NCBI
Target Description F27D9.6 /REP_DB=WormBase Gene ID /WP=CE28011 /TR=Q19843 /GB=AAK68350.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076893(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076893 NCBI Caenorhabditis elegans DeHydrogenases, Short chain family member (dhs-29) (dhs-29) mRNA, complete cds. 11/11 None
SNAP00000002721 ENSEMBL cdna:SNAP chromosome:CEL140:X:7661935:7664853:-1 11/11 None
GENEFINDER00000002731 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:7661935:7664853:-1 11/11 None
F27D9.6 ENSEMBL cdna:known chromosome:CEL140:X:7661843:7664853:-1 gene:F27D9.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:7661933-7663440(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol dhs-29
Ensembl F27D9.6
Entrez Gene 181027 Entrez gene
SwissProt Q19843 EMBL-EBI
WormBase CE28011 Wormbase
Functional Annotations
Ortholog
ID Title Organism
DROSOPHILA_2:1635175_AT dm
DROSGENOME1:150415_AT dm
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
8152 metabolism inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
16491 oxidoreductase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAK68350 Dehydrogenases, short chain protein 29 [Caenorhabditis elegans] ref|NP_509294.1| DeHydrogenases, Short chain family member (dhs-29) [Caenorhabditis elegans] 0.0
blast CAE70255 Hypothetical protein CBG16756 [Caenorhabditis briggsae] 0.0
blast AAH54138 Zgc:63829 [Danio rerio] ref|NP_999936.1| hypothetical protein LOC406799 [Danio rerio] 5.0E-43
Protein Domains
Database ID Description E-Value
Pfam IPR002198 EMBL-EBI Short-chain dehydrogenase/reductase SDR 7.0E-55
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_509294.1 2 322-344,364-386
F27D9.6 2 322-344,364-386
SNAP00000002721 2 322-344,364-386
GENEFINDER00000002731 2 322-344,364-386
Sequence
Target Sequence 
>C. ELEGANS:179799_S_AT
tacgctctacccatattttgcaagaaccccaatgattttggaaaataatatgagacctac
atgtacatggttcccgttcatgagcattcggtcttgctcgaaaagaatggtagattctat
tttgaaagaaaaagtgcacgcttttgttccctcgtacatcacactcatcccttttgtgaa
aaatttctgctctcttcaagtgtgccggtcgcttcgtaattatttgggtgttaagtattc
cgcttcagatccatcattttgcaaactgacacttattgaaatgtcggactattacaaaac
tccacaactcttctggtggctcctcattgttccagctctggctatcaactacatttctta
cgcccatccagcagcagcacttaatattccattaattggatctctcgtccataagattgg
aactgagtatccatttgttgctcttttaaccaaccttttcgcccttgtagcacacgccgg
tgaagctctttacgctctttatc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TACGCTCTACCCATATTTTGCAAGA 506 649 180 Antisense
GACCTACATGTACATGGTTCCCGTT 234 383 233 Antisense
GGTTCCCGTTCATGAGCATTCGGTC 380 503 248 Antisense
GCCGGTCGCTTCGTAATTATTTGGG 2 285 383 Antisense
TAAGTATTCCGCTTCAGATCCATCA 566 637 411 Antisense
AACTCCACAACTCTTCTGGTGGCTC 149 143 477 Antisense
TCCTCATTGTTCCAGCTCTGGCTAT 169 593 500 Antisense
CCCATCCAGCAGCAGCACTTAATAT 702 255 542 Antisense
GTATCCATTTGTTGCTCTTTTAACC 404 455 606 Antisense
CTTGTAGCACACGCCGGTGAAGCTC 507 217 643 Antisense
GGTGAAGCTCTTTACGCTCTTTATC 388 501 658 Antisense
Sequence Source Affymetrix Proprietary Database