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[179798_s_at]

Description T24C4.7 /REP_DB=WormBase Gene ID /WP=CE19598 /TR=Q9TZ31 /GB=AAC68926.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 86      6grp_total > 87      4grp_total > 55      6grp_high1_sub > In      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 426
1 2 3 4 range
A 438.5
(3)
P 		198.5
(-0.8)
A 		227.2
(-0.3)
A 		59.3
(-3)
A 		379
B 430
(3)
P 		198.6
(-3)
A 		220.9
(-2.4)
A 		248.9
(-1.7)
A 		231
C 485
(3)
P 		178.1
(-3)
A 		337.5
(0.1)
A 		307.4
(-0.5)
A 		307
avr 451.2
(3) 		191.7
(-3) 		261.9
(-1.4) 		205.2
(-2.7) 		260

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 508
1 2 3 4 5 6 range
A 446.5
(0.4)
A 		383.8
(-0.7)
P 		249.5
(-3)
A 		415.4
(-0.1)
P 		458
(0.6)
A 		592.7
(3)
P 		343
B 320.5
(-3)
A 		319.1
(-3)
A 		425.3
(-1.2)
P 		437.4
(-1)
A 		455.5
(-0.7)
P 		668.1
(3)
P 		349
C 326.2
(-3)
P 		373.6
(-2.3)
A 		393.7
(-2.1)
M 		439.1
(-1.4)
A 		498.1
(-0.6)
P 		757.4
(3)
P 		431
avr 364.4
(-2.8) 		358.8
(-3) 		356.2
(-3) 		430.6
(-1.6) 		470.5
(-0.8) 		672.7
(3) 		317
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 152
1 2 3 4 range
A 159.7
(3)
P 		43.1
(-1.6)
A 		59.4
(-1)
A 		8.7
(-3)
A 		151
B 137.1
(3)
P 		49
(-3)
A 		51.2
(-2.9)
A 		53
(-2.7)
A 		88
C 160.5
(3)
P 		51.2
(-3)
A 		117.6
(0.6)
A 		51.8
(-3)
A 		109
avr 152.4
(3) 		47.8
(-2.5) 		76.1
(-1) 		37.8
(-3) 		115

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 199
1 2 3 4 5 6 range
A 82.3
(-1.1)
A 		136.5
(2.5)
P 		54.3
(-3)
A 		105.4
(0.4)
P 		138.2
(2.6)
A 		144.3
(3)
P 		90
B 111.5
(-2.7)
A 		106.2
(-2.9)
A 		103.3
(-3)
P 		115.9
(-2.5)
A 		185.1
(0.4)
P 		249.1
(3)
P 		146
C 120.9
(-1.8)
P 		114
(-2.1)
A 		100.2
(-2.6)
M 		88.3
(-3)
A 		161.2
(-0.4)
P 		253.5
(3)
P 		165
avr 104.9
(-2.1) 		118.9
(-1.5) 		85.9
(-3) 		103.2
(-2.2) 		161.5
(0.5) 		215.6
(3) 		130
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 179798_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8335
Sequence Type Exemplar sequence
Representative Public ID T24C4.7 NCBI
Target Description T24C4.7 /REP_DB=WormBase Gene ID /WP=CE19598 /TR=Q9TZ31 /GB=AAC68926.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064885(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064885 NCBI Caenorhabditis elegans T24C4.7 (T24C4.7) mRNA, complete cds. 11/11 None
SNAP00000044719 ENSEMBL cdna:SNAP chromosome:CEL140:III:891367:895591:-1 11/11 None
GENEFINDER00000044728 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:891367:895591:-1 11/11 None
T24C4.7 ENSEMBL cdna:known chromosome:CEL140:III:891322:895621:-1 gene:T24C4.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:891366-895591(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T24C4.7
Entrez Gene 175250 Entrez gene
SwissProt Q9TZ31 EMBL-EBI
WormBase CE19598 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
5634 nucleus inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3676 nucleic acid binding inferred from electronic annotation QuickGO AmiGO
8270 zinc ion binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAC68926 Hypothetical protein T24C4.7 [Caenorhabditis elegans] ref|NP_497286.1| T24C4.7 [Caenorhabditis elegans] 0.0
blast CAE69146 Hypothetical protein CBG15176 [Caenorhabditis briggsae] 0.0
Sequence
Target Sequence 
>C. ELEGANS:179798_S_AT
gagagcactgcagatttcattcggtatatccggaaaacgacgagtcttacgcgaaaatgg
acgcagcgctctcatcgtttattgcgtataacaaagattccagtaaggaagctgagaagg
atttacaggattctaccccaatagaacaaatattaaatgaagttggacgacggcgccttg
aaagtgaaataactgtcgaagatccagaagatctggctccaccaattctagagccaatgg
aaccaacagaaagacatttggatacagaggaggaggaagaggaaccaaatcaaattccaa
tggcctccgagcatattgatattgagggagtcgacgaagaggaaattatggaacattcgg
tcaatgcaatttcagaggaaatcctcttcgagtatgctgatgataaacgagatgatggtc
cttccacgccgaaacgtggcaggagaagaaagtcgccatcagaatcggcgggaaaaaaga
agaaactatcgaataatgatgaattcgtggaatctacagtctctaggcgatcatcagcga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGAGCACTGCAGATTTCATTCGGT 307 393 1826 Antisense
AAACGACGAGTCTTACGCGAAAATG 690 125 1860 Antisense
AAAATGGACGCAGCGCTCTCATCGT 330 133 1879 Antisense
AGCGCTCTCATCGTTTATTGCGTAT 181 83 1890 Antisense
AGGATTTACAGGATTCTACCCCAAT 404 55 1943 Antisense
CCAGAAGATCTGGCTCCACCAATTC 388 273 2029 Antisense
AATTCCAATGGCCTCCGAGCATATT 82 179 2118 Antisense
AAACGAGATGATGGTCCTTCCACGC 285 125 2230 Antisense
GTCCTTCCACGCCGAAACGTGGCAG 323 475 2243 Antisense
GAATTCGTGGAATCTACAGTCTCTA 2 325 2326 Antisense
ACAGTCTCTAGGCGATCATCAGCGA 408 107 2341 Antisense
Sequence Source Affymetrix Proprietary Database