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[179794_at]

Description T05E11.8 /REP_DB=WormBase Gene ID /WP=CE06367 /TR=Q22237 /GB=CAA92976.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 81      4grp_total > 53      6grp_total_sub > Hat      6grp_rule_based > S4      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 173
1 2 3 4 range
A 159.8
(2.5)
P 		173.3
(3)
A 		103.7
(0.4)
A 		15.1
(-3)
A 		158
B 181.7
(3)
P 		123.6
(1)
A 		123.2
(1)
A 		9.1
(-3)
A 		173
C 153.6
(3)
P 		103.4
(-0.8)
A 		90.4
(-1.8)
A 		75.2
(-3)
A 		78
avr 165
(3) 		133.4
(1.6) 		105.8
(0.3) 		33.1
(-3) 		132

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 886
1 2 3 4 5 6 range
A 118.6
(-3)
P 		175.1
(-2.6)
A 		172
(-2.6)
P 		1004.2
(3)
P 		671.4
(0.7)
P 		276.6
(-1.9)
P 		886
B 158.1
(-3)
A 		164.7
(-2.9)
A 		242.2
(-2.3)
M 		748.1
(2)
P 		861.9
(3)
P 		253
(-2.2)
P 		704
C 124.1
(-3)
A 		176.9
(-2.6)
A 		158.8
(-2.8)
P 		988.9
(3)
P 		650.6
(0.7)
P 		264.4
(-2)
P 		865
avr 133.6
(-3) 		172.2
(-2.7) 		191
(-2.6) 		913.7
(3) 		728
(1.6) 		264.7
(-2) 		780
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 56
1 2 3 4 range
A 58.2
(3)
P 		37.6
(0.8)
A 		27.1
(-0.3)
A 		2.2
(-3)
A 		56
B 58
(3)
P 		30.5
(0.1)
A 		28.6
(-0.1)
A 		1.9
(-3)
A 		56
C 50.8
(3)
P 		29.7
(-0.3)
A 		31.5
(-0)
A 		12.7
(-3)
A 		38
avr 55.7
(3) 		32.6
(0.2) 		29.1
(-0.2) 		5.6
(-3) 		50

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 328
1 2 3 4 5 6 range
A 21.9
(-3)
P 		62.3
(-2)
A 		37.4
(-2.6)
P 		254.7
(3)
P 		202.6
(1.7)
P 		67.3
(-1.8)
P 		233
B 55
(-3)
A 		54.8
(-3)
A 		58.8
(-2.9)
M 		198.1
(-0.1)
P 		350.2
(3)
P 		94.3
(-2.2)
P 		295
C 46
(-2.8)
A 		54
(-2.5)
A 		40.4
(-3)
P 		198.9
(2.6)
P 		210.5
(3)
P 		88.5
(-1.3)
P 		170
avr 41
(-3) 		57
(-2.6) 		45.5
(-2.9) 		217.2
(2) 		254.4
(3) 		83.4
(-1.8) 		213
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179794_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9827
Sequence Type Exemplar sequence
Representative Public ID T05E11.8 NCBI
Target Description T05E11.8 /REP_DB=WormBase Gene ID /WP=CE06367 /TR=Q22237 /GB=CAA92976.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069674(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069674 NCBI Caenorhabditis elegans T05E11.8 (T05E11.8) mRNA, complete cds. 11/11 None
SNAP00000031858 ENSEMBL cdna:SNAP chromosome:CEL140:IV:11104785:11105790:-1 11/11 None
GENEFINDER00000031871 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:11104785:11105790:-1 11/11 None
T05E11.8 ENSEMBL cdna:known chromosome:CEL140:IV:11104785:11105790:-1 gene:T05E11.8 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:11104790-11105796(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T05E11.8
Entrez Gene 188133 Entrez gene
SwissProt Q22237 EMBL-EBI
WormBase CE06367 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA92976 Hypothetical protein T05E11.8 [Caenorhabditis elegans] ref|NP_502075.1| T05E11.8 [Caenorhabditis elegans] 6.0E-63
blast CAE62001 Hypothetical protein CBG06009 [Caenorhabditis briggsae] 2.0E-38
blast CAB05285 Hypothetical protein T23G4.5 [Caenorhabditis elegans] ref|NP_502644.1| T23G4.5 [Caenorhabditis elegans] 2.0E-30
Protein Domains
Database ID Description E-Value
Pfam IPR003677 EMBL-EBI Protein of unknown function, DUF 148 2.5E-59
Sequence
Target Sequence 
>C. ELEGANS:179794_AT
tgctcttgttgcaatcgtcaatgccggtccaggggaggaaagagaaaaaggaccaggaga
acacaaaagaggtggaaaacatcacggcttcccatcattctttggaaatgtatctgctga
aggaaggaaggaaatcgcagtggtttttaagaatgagaatctgacattggctcaagctga
cactcaaattgcatctttggctgaaaaatatggatttgctgccgcatacaaagagcacaa
agagaaggaagctgtaagacaagccgaaacaaaaaagaacacaactacagtgatcaataa
tctttcgtcagttgccacgaagctttctgcaattcgcgagaacaaggatcaaacccgaaa
ggctcaacatgaagcaattgaggctcttcgtaacgaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGCTCTTGTTGCAATCGTCAATGCC 242 581 42 Antisense
CGTCAATGCCGGTCCAGGGGAGGAA 618 219 57 Antisense
GTGGAAAACATCACGGCTTCCCATC 520 489 113 Antisense
CGGCTTCCCATCATTCTTTGGAAAT 202 243 126 Antisense
GACATTGGCTCAAGCTGACACTCAA 215 371 204 Antisense
GACACTCAAATTGCATCTTTGGCTG 497 367 220 Antisense
ATATGGATTTGCTGCCGCATACAAA 233 21 249 Antisense
CAATAATCTTTCGTCAGTTGCCACG 459 181 336 Antisense
GCCACGAAGCTTTCTGCAATTCGCG 1 281 355 Antisense
GGATCAAACCCGAAAGGCTCAACAT 443 511 387 Antisense
AGCAATTGAGGCTCTTCGTAACGAA 39 73 414 Antisense
Sequence Source Affymetrix Proprietary Database