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[179793_s_at]

Description D2092.2 /REP_DB=WormBase Gene ID /WP=CE09101 /TR=P91198 /GB=AAB42229.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 98      6grp_high1_10_10 > 89      4grp_highest_8_8 > 08      4grp_high_8_8 > 44      6grp_highest_nonorm > 74      6grp_total > 59      4grp_total > 51      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 514
1 2 3 4 range
A 888.1
(-1.2)
P 		1101.4
(3)
P 		943.2
(-0.1)
P 		799.9
(-3)
P 		302
B 772.9
(-0.2)
P 		952.8
(2.9)
P 		959.3
(3)
P 		611.1
(-3)
P 		348
C 962.1
(2.6)
P 		986.7
(3)
P 		785.2
(-0)
P 		587.5
(-3)
P 		399
avr 874.4
(0.6) 		1013.6
(3) 		895.9
(1) 		666.2
(-3) 		347

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 339
1 2 3 4 5 6 range
A 872.3
(3)
P 		761.9
(0.6)
P 		591.5
(-3)
P 		670.2
(-1.3)
P 		838.6
(2.3)
P 		776.8
(1)
P 		281
B 724.3
(0.1)
P 		577.6
(-3)
P 		717.1
(-0.1)
P 		792.7
(1.5)
P 		724.9
(0.1)
P 		862
(3)
P 		284
C 754.3
(2)
P 		533.4
(-3)
P 		746.1
(1.9)
P 		601.8
(-1.4)
P 		764.3
(2.3)
P 		796.5
(3)
P 		263
avr 783.6
(2.1) 		624.3
(-3) 		684.9
(-1.1) 		688.2
(-1) 		775.9
(1.9) 		811.8
(3) 		188
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 224
1 2 3 4 range
A 323.3
(3)
P 		239.1
(0.5)
P 		246.6
(0.8)
P 		117.1
(-3)
P 		206
B 246.5
(3)
P 		235.3
(2.4)
P 		222.3
(1.8)
P 		130.2
(-3)
P 		116
C 318.5
(3)
P 		283.7
(2)
P 		273.7
(1.8)
P 		99.1
(-3)
P 		219
avr 296.1
(3) 		252.7
(1.6) 		247.5
(1.4) 		115.5
(-3) 		181

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 200
1 2 3 4 5 6 range
A 160.8
(-1.6)
P 		271
(3)
P 		128.8
(-3)
P 		170
(-1.3)
P 		253.1
(2.2)
P 		189.1
(-0.5)
P 		142
B 252
(0.2)
P 		192.2
(-2.3)
P 		174.1
(-3)
P 		209.9
(-1.5)
P 		294.5
(1.9)
P 		321.4
(3)
P 		147
C 279.6
(3)
P 		162.7
(-1.4)
P 		189.9
(-0.4)
P 		121
(-3)
P 		247.3
(1.8)
P 		266.6
(2.5)
P 		159
avr 230.8
(1) 		208.6
(-0.4) 		164.3
(-3) 		167
(-2.8) 		265
(3) 		259
(2.6) 		101
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 179793_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.719
Sequence Type Exemplar sequence
Representative Public ID D2092.2 NCBI
Target Description D2092.2 /REP_DB=WormBase Gene ID /WP=CE09101 /TR=P91198 /GB=AAB42229.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059506(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059506 NCBI Caenorhabditis elegans D2092.2 (D2092.2) mRNA, complete cds. 11/11 None
SNAP00000030850 ENSEMBL cdna:SNAP chromosome:CEL140:I:6633531:6634914:-1 11/11 None
GENEFINDER00000030863 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:6633531:6635080:-1 11/11 None
D2092.2 ENSEMBL cdna:known chromosome:CEL140:I:6633192:6634930:-1 gene:D2092.2 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:6633459-6634843(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl D2092.2
Entrez Gene 172381 Entrez gene
SwissProt P91198 EMBL-EBI
WormBase CE09101 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB42229 Hypothetical protein D2092.2 [Caenorhabditis elegans] ref|NP_491907.1| D2092.2 [Caenorhabditis elegans] 1.0E-171
blast CAE67247 Hypothetical protein CBG12687 [Caenorhabditis briggsae] 1.0E-117
blast XP_783289 PREDICTED: similar to protein phosphatase 4, regulatory subunit 2 [Strongylocentrotus purpuratus] 9.0E-11
Sequence
Target Sequence 
>C. ELEGANS:179793_S_AT
ttgatgggtttcccttcacatggcagagactctgtgaactacttatagagcccatgcgac
actataacacgattgataagttcttgagagctgttgacaaggtgattaatgtcgtgacaa
caataaatgaaaatggtggacgctcttttggagattgggatcttccaaactcacaacaat
ttcatttggaaaatacattctttggagttgtggacgaagtggaaatgatggaattagaga
aagtgaaacacgatttccaatcatcgtcttctcctagtgaagaacctcttgatatgagtc
aaaaatcgatgccagctccacgcgtgtcaacagcatctcctgatccaccatcatttgttc
taccaactgctcgatctccaattaatacatctccgtcatcttctccaaaggcttcatcac
ctaaagcttcatcgccaaaagcagcttccccagtttcatcaccaaaatcgcctgtaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTGATGGGTTTCCCTTCACATGGCA 561 703 524 Antisense
GAGCCCATGCGACACTATAACACGA 650 385 571 Antisense
GGTGGACGCTCTTTTGGAGATTGGG 485 499 658 Antisense
TCAAAAATCGATGCCAGCTCCACGC 26 629 822 Antisense
CCATCATTTGTTCTACCAACTGCTC 551 269 871 Antisense
CCAACTGCTCGATCTCCAATTAATA 275 277 886 Antisense
CAATTAATACATCTCCGTCATCTTC 44 181 902 Antisense
TCATCTTCTCCAAAGGCTTCATCAC 42 621 919 Antisense
TTCATCACCTAAAGCTTCATCGCCA 249 689 936 Antisense
GCTTCATCGCCAAAAGCAGCTTCCC 573 305 949 Antisense
GTTTCATCACCAAAATCGCCTGTAA 81 451 976 Antisense
Sequence Source Affymetrix Proprietary Database