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[179792_at]

Description F53A3.7 /REP_DB=WormBase Gene ID /WP=CE23764 /TR=Q9TXQ4 /GB=AAF02170.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 56      6grp_high1_10_10 > 65      4grp_highest_8_8 > 06      4grp_high_8_8 > 22      6grp_highest_nonorm > 73      6grp_total > 54      4grp_total > 17      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 301
1 2 3 4 range
A 495.2
(-3)
P 		657.6
(1.4)
P 		592.3
(-0.4)
P 		717.6
(3)
P 		222
B 583.1
(-3)
P 		585
(-2.9)
P 		691.8
(0.1)
P 		796.5
(3)
P 		213
C 614.7
(2.8)
P 		595.3
(0.8)
P 		558.9
(-3)
P 		616.7
(3)
P 		58
avr 564.3
(-3) 		612.6
(-1) 		614.3
(-0.9) 		710.3
(3) 		146

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 285
1 2 3 4 5 6 range
A 509.9
(1.3)
P 		470.9
(-0.6)
P 		543.5
(3)
P 		514.8
(1.6)
P 		422.6
(-3)
P 		489.1
(0.3)
P 		121
B 429.6
(-1.7)
P 		512.1
(0.1)
P 		651.3
(3)
P 		366.1
(-3)
P 		492.9
(-0.3)
P 		527.5
(0.4)
P 		285
C 473.9
(-1.1)
P 		474.2
(-1.1)
P 		456.5
(-1.7)
P 		416.6
(-3)
P 		554.2
(1.5)
P 		600
(3)
P 		183
avr 471.1
(-1) 		485.7
(-0.3) 		550.4
(3) 		432.5
(-3) 		489.9
(-0.1) 		538.9
(2.4) 		118
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 100
1 2 3 4 range
A 180.3
(3)
P 		142.7
(0)
P 		154.8
(1)
P 		105
(-3)
P 		75
B 186
(3)
P 		144.5
(-3)
P 		160.3
(-0.7)
P 		169.7
(0.6)
P 		42
C 203.5
(3)
P 		171.1
(1)
P 		194.8
(2.5)
P 		104
(-3)
P 		100
avr 189.9
(3) 		152.8
(-0.5) 		170
(1.1) 		126.2
(-3) 		64

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 117
1 2 3 4 5 6 range
A 94
(-3)
P 		167.5
(3)
P 		118.4
(-1)
P 		130.6
(-0)
P 		127.5
(-0.3)
P 		119.1
(-1)
P 		74
B 149.5
(0)
P 		170.5
(1.3)
P 		158.2
(0.6)
P 		97
(-3)
P 		200.3
(3)
P 		196.7
(2.8)
P 		103
C 175.7
(1.7)
P 		144.7
(0.1)
P 		116.2
(-1.3)
P 		83.8
(-3)
P 		179.3
(1.9)
P 		200.9
(3)
P 		117
avr 139.7
(0.1) 		160.9
(2) 		130.9
(-0.6) 		103.8
(-3) 		169
(2.7) 		172.2
(3) 		68
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179792_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8307
Sequence Type Exemplar sequence
Representative Public ID F53A3.7 NCBI
Target Description F53A3.7 /REP_DB=WormBase Gene ID /WP=CE23764 /TR=Q9TXQ4 /GB=AAF02170.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065081(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065081 NCBI Caenorhabditis elegans F53A3.7 (F53A3.7) mRNA, complete cds. 11/11 None
GENEFINDER00000032924 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:1951516:1952000:1 11/11 None
F53A3.7 ENSEMBL cdna:known chromosome:CEL140:III:1951516:1952017:1 gene:F53A3.7 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:1951515-1952000(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F53A3.7
Entrez Gene 266654 Entrez gene
SwissProt Q9TXQ4 EMBL-EBI
WormBase CE23764 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6118 electron transport inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5489 electron transporter activity inferred from electronic annotation QuickGO AmiGO
20037 heme binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAF02170 Hypothetical protein F53A3.7 [Caenorhabditis elegans] ref|NP_497482.1| F53A3.7 [Caenorhabditis elegans] 2.0E-64
blast CAE66464 Hypothetical protein CBG11741 [Caenorhabditis briggsae] 2.0E-38
blast AAS15675 LP13032p [Drosophila melanogaster] 9.0E-19
Protein Domains
Database ID Description E-Value
Pfam IPR007853 EMBL-EBI DNL zinc finger 2.9E-44
Sequence
Target Sequence 
>C. ELEGANS:179792_AT
cagcagtttcagctctctatagagcatcgagaagcttctccgagacagttcccagacttt
cagccactccactggggaagcaagagccccagttgtccctgtcatacacctgcaaagtgt
gcaactcccgggagggcccaaaaacatttgccaagtcatcatacgagaagggagttgtca
ttgtcacgtgctccggctgtcacaaccatcacatcatcgctgacaatatcggatggttcg
aggactttaaaggaaaaaacatcgaggatcatctgaaaacgcgaggagaagccgtgaaac
gtcgtgacac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CAGCAGTTTCAGCTCTCTATAGAGC 62 205 23 Antisense
GAGAAGCTTCTCCGAGACAGTTCCC 89 393 51 Antisense
TTCAGCCACTCCACTGGGGAAGCAA 639 687 81 Antisense
GGGAAGCAAGAGCCCCAGTTGTCCC 395 493 97 Antisense
TCCCTGTCATACACCTGCAAAGTGT 408 597 118 Antisense
AACATTTGCCAAGTCATCATACGAG 642 137 165 Antisense
AAGGGAGTTGTCATTGTCACGTGCT 554 159 190 Antisense
ACCATCACATCATCGCTGACAATAT 422 87 227 Antisense
AATATCGGATGGTTCGAGGACTTTA 277 173 247 Antisense
GAGGATCATCTGAAAACGCGAGGAG 421 403 286 Antisense
GAGAAGCCGTGAAACGTCGTGACAC 692 391 308 Antisense
Sequence Source Affymetrix Proprietary Database