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[179790_at]

Description T24C4.5 /REP_DB=WormBase Gene ID /WP=CE19596 /TR=Q9TZ34 /GB=AAC68924.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 88      4grp_total > 35      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 61
1 2 3 4 range
A 20.4
(-1.4)
A 		64.7
(3)
A 		3.7
(-3)
A 		7
(-2.7)
A 		61
B 26.5
(-2.8)
A 		46.2
(2.2)
A 		25.9
(-3)
A 		49.5
(3)
A 		24
C 40.4
(0.8)
A 		56.3
(3)
A 		13.5
(-3)
A 		49.8
(2.1)
P 		43
avr 29.1
(-0.9) 		55.7
(3) 		14.4
(-3) 		35.4
(0.1) 		41

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 221
1 2 3 4 5 6 range
A 51.7
(-2.1)
A 		45.8
(-2.4)
A 		32
(-3)
A 		52.9
(-2.1)
A 		102.1
(0.1)
P 		167.9
(3)
P 		136
B 36.8
(-2.5)
A 		66.5
(-1.6)
A 		19.8
(-3)
A 		36
(-2.5)
A 		124.6
(0.1)
P 		220.9
(3)
P 		201
C 34.2
(-2.2)
A 		46.3
(-1.9)
A 		5.2
(-3)
A 		49
(-1.8)
A 		99.6
(-0.4)
P 		226.2
(3)
P 		221
avr 40.9
(-2.3) 		52.9
(-1.9) 		19
(-3) 		46
(-2.1) 		108.8
(-0.1) 		205
(3) 		186
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 15
1 2 3 4 range
A 7.4
(-0)
A 		14
(3)
A 		1
(-3)
A 		1
(-3)
A 		13
B 8.4
(-0.3)
A 		11.4
(3)
A 		6
(-3)
A 		10.6
(2.1)
A 		5
C 13.4
(1.5)
A 		16.2
(3)
A 		4.7
(-3)
A 		8.4
(-1.1)
P 		12
avr 9.7
(0.5) 		13.9
(3) 		3.9
(-3) 		6.7
(-1.3) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 81
1 2 3 4 5 6 range
A 9.5
(-2.6)
A 		16.3
(-1.4)
A 		7
(-3)
A 		13.4
(-1.9)
A 		30.8
(1.2)
P 		40.9
(3)
P 		34
B 12.8
(-2.4)
A 		22.2
(-1.7)
A 		4.8
(-3)
A 		9.5
(-2.6)
A 		50.6
(0.5)
P 		82.4
(3)
P 		78
C 12.7
(-2.1)
A 		14.1
(-2)
A 		1.3
(-3)
A 		9.8
(-2.3)
A 		32.2
(-0.5)
P 		75.7
(3)
P 		74
avr 11.7
(-2.3) 		17.5
(-1.7) 		4.4
(-3) 		10.9
(-2.4) 		37.9
(0.2) 		66.3
(3) 		62
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179790_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8293
Sequence Type Exemplar sequence
Representative Public ID T24C4.5 NCBI
Target Description T24C4.5 /REP_DB=WormBase Gene ID /WP=CE19596 /TR=Q9TZ34 /GB=AAC68924.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064882(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064882 NCBI Caenorhabditis elegans T24C4.5 (T24C4.5) mRNA, complete cds. 10/11 None
SNAP00000044717 ENSEMBL cdna:SNAP chromosome:CEL140:III:877583:879561:-1 11/11 None
GENEFINDER00000044723 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:877583:879561:-1 11/11 None
T24C4.5 ENSEMBL cdna:known chromosome:CEL140:III:877608:879561:-1 gene:T24C4.5 10/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:877582-879561(-) 100.0 100.0
chrIII:9612238-9614171(-) 92.66 92.66
Public Domain and Genome References
Gene Title
Ensembl T24C4.5
Entrez Gene 188846 Entrez gene
SwissProt Q9TZ34 EMBL-EBI
WormBase CE34598 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6269 DNA replication, synthesis of RNA primer inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3896 DNA primase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAC68924 Hypothetical protein T24C4.5 [Caenorhabditis elegans] ref|NP_497283.2| T24C4.5 [Caenorhabditis elegans] 0.0
blast CAA80161 Hypothetical protein F58A4.4 [Caenorhabditis elegans] ref|NP_499126.1| DNA PRImase homolog family member (pri-1) [Caenorhabditis elegans] sp|P34471|PRI1_CAEEL DNA primase small subunit 0.0
blast CAE65161 Hypothetical protein CBG10030 [Caenorhabditis briggsae] 1.0E-180
blast AAC68924 Hypothetical protein T24C4.5 [Caenorhabditis elegans] ref|NP_497283.2| T24C4.5 [Caenorhabditis elegans] 1.0E-176
blast CAA80161 Hypothetical protein F58A4.4 [Caenorhabditis elegans] ref|NP_499126.1| DNA PRImase homolog family member (pri-1) [Caenorhabditis elegans] sp|P34471|PRI1_CAEEL DNA primase small subunit 1.0E-161
Protein Domains
Database ID Description E-Value
Pfam IPR002755 EMBL-EBI DNA primase, small subunit 1.9E-57
Pfam IPR002755 EMBL-EBI DNA primase, small subunit 1.6E-16
Sequence
Target Sequence 
>C. ELEGANS:179790_AT
gccgactgtgcgtgacgcttttaatgttgcattgaaagatggagttttcgagaaaatgat
ctatgaacagggatggctggataatgatcgttttatcatagattaccagtatatgtccga
attcggcagagatgacttgcgtagaatatccgagtctttcaaaactccacaagaacgctg
gcacatgcttcgtgggctttttgataacgactatcgcaaaacgctttctcaaaatgacgg
acttctcgattttgtaaacaatgcaaggtcgcgaccgaaaaaggttcttctctactttgt
tcttcaacgatgttatccacgtcttgatgcaaatgtaactacaggcacaaatcacttgct
caaatccccattctgtattcatccgaagaccggaaacgttgctgttcctctgaatgtcga
aaaaattggcgagttcgatgtaagcaaatgcccacgaattgatcatgt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCCGACTGTGCGTGACGCTTTTAAT 169 281 636 Antisense
GCGTGACGCTTTTAATGTTGCATTG 68 293 645 Antisense
TTACCAGTATATGTCCGAATTCGGC 11 681 738 Antisense
TTGCGTAGAATATCCGAGTCTTTCA 227 695 772 Antisense
CAAGAACGCTGGCACATGCTTCGTG 371 185 805 Antisense
ACTATCGCAAAACGCTTTCTCAAAA 130 103 845 Antisense
ATGACGGACTTCTCGATTTTGTAAA 496 43 869 Antisense
ATCCACGTCTTGATGCAAATGTAAC 6 41 950 Antisense
AACTACAGGCACAAATCACTTGCTC 48 141 972 Antisense
TCCCCATTCTGTATTCATCCGAAGA 218 597 1000 Antisense
GCAAATGCCCACGAATTGATCATGT 97 319 1079 Antisense
Sequence Source Affymetrix Proprietary Database