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[179789_at]

Description F10D2.3 /REP_DB=WormBase Gene ID /WP=CE09314 /TR=O16912 /GB=AAC48234.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 09      4grp_high_8_8 > 19      6grp_total > 09      4grp_total > 29      6grp_cgc > 0      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 100
1 2 3 4 range
A 136.2
(1.6)
P 		92
(-1.4)
P 		67.9
(-3)
A 		157.4
(3)
P 		90
B 127
(3)
P 		108.2
(1.4)
P 		57.9
(-3)
M 		105.2
(1.1)
P 		69
C 118.5
(2.1)
P 		126.5
(3)
P 		73.7
(-3)
P 		118.3
(2.1)
P 		53
avr 127.2
(3) 		108.9
(1.2) 		66.5
(-3) 		127
(3) 		61

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 65
1 2 3 4 5 6 range
A 117.2
(3)
P 		54.2
(-3)
P 		74.8
(-1)
P 		78.6
(-0.7)
P 		106.1
(1.9)
P 		72.1
(-1.3)
P 		63
B 85.9
(0.5)
P 		97.5
(1.7)
P 		52.3
(-3)
A 		109.7
(3)
P 		107.4
(2.8)
P 		59.6
(-2.2)
P 		57
C 104.3
(2.1)
P 		65.3
(-2.3)
P 		112.2
(3)
P 		90.2
(0.5)
P 		59.6
(-3)
M 		61.8
(-2.7)
P 		53
avr 102.5
(3) 		72.3
(-1.8) 		79.8
(-0.6) 		92.8
(1.5) 		91
(1.2) 		64.5
(-3) 		38
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 36
1 2 3 4 range
A 49.6
(3)
P 		20
(-2.6)
P 		17.8
(-3)
A 		23
(-2)
P 		32
B 40.5
(3)
P 		26.7
(-0.1)
P 		13.4
(-3)
M 		22.4
(-1)
P 		27
C 39.2
(3)
P 		36.4
(2.1)
P 		25.7
(-1.2)
P 		19.9
(-3)
P 		19
avr 43.1
(3) 		27.7
(-0.8) 		19
(-3) 		21.8
(-2.3) 		24

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 31
1 2 3 4 5 6 range
A 21.6
(-1)
P 		19.3
(-1.9)
P 		16.3
(-3)
P 		19.9
(-1.6)
P 		32
(3)
P 		17.6
(-2.5)
P 		16
B 29.9
(0.3)
P 		32.4
(0.8)
P 		12.7
(-3)
A 		29
(0.2)
P 		43.7
(3)
P 		22.2
(-1.2)
P 		31
C 38.7
(3)
P 		19.9
(-2.5)
P 		28.6
(0.1)
P 		18.1
(-3)
P 		19.3
(-2.7)
M 		20.7
(-2.2)
P 		21
avr 30.1
(2.2) 		23.9
(-0.7) 		19.2
(-3) 		22.3
(-1.5) 		31.7
(3) 		20.2
(-2.5) 		13
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179789_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12328
Sequence Type Exemplar sequence
Representative Public ID F10D2.3 NCBI
Target Description F10D2.3 /REP_DB=WormBase Gene ID /WP=CE09314 /TR=O16912 /GB=AAC48234.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
SNAP00000033804 ENSEMBL cdna:SNAP chromosome:CEL140:V:7137432:7138274:1 9/11 None
GENEFINDER00000033818 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:7135140:7138336:1 10/11 None
F10D2.3 ENSEMBL cdna:known chromosome:CEL140:V:7135140:7138274:1 gene:F10D2.3 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000033803 1/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:7135140-7138275(+) 100.0 100.0
Public Domain and Genome References
Ensembl F10D2.3
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAE72008 Hypothetical protein CBG19087 [Caenorhabditis briggsae] 1.0E-122
blast NP_504764 Serpentine Receptor, class E (epsilon) family member (sre-12) [Caenorhabditis elegans] gb|AAC17675.1| Serpentine receptor, class e (epsilon) protein 12 [Caenorhabditis elegans] sp|O61898|SRE12_CAEEL Serpentine receptor class epsilon-12 (Protein sre-12) 3.0E-63
blast AAN84867 Serpentine receptor, class e (epsilon) protein 11 [Caenorhabditis elegans] ref|NP_872215.2| Serpentine Receptor, class E (epsilon) family member (sre-11) [Caenorhabditis elegans] 1.0E-57
blast CAE72008 Hypothetical protein CBG19087 [Caenorhabditis briggsae] 1.0E-55
blast AAN84867 Serpentine receptor, class e (epsilon) protein 11 [Caenorhabditis elegans] ref|NP_872215.2| Serpentine Receptor, class E (epsilon) family member (sre-11) [Caenorhabditis elegans] 2.0E-42
blast NP_504764 Serpentine Receptor, class E (epsilon) family member (sre-12) [Caenorhabditis elegans] gb|AAC17675.1| Serpentine receptor, class e (epsilon) protein 12 [Caenorhabditis elegans] sp|O61898|SRE12_CAEEL Serpentine receptor class epsilon-12 (Protein sre-12) 7.0E-41
Protein Domains
Database ID Description E-Value
Pfam IPR004151 EMBL-EBI C. elegans Sre G protein-coupled chemoreceptor 1.0E-126
Pfam IPR004151 EMBL-EBI C. elegans Sre G protein-coupled chemoreceptor 7.6E-87
Trans Membrane
ID Number Of Domains Domain Boundaries
F10D2.3 8 26-48,55-77,97-119,140-162,166-188,243-262,272-294,424-446
SNAP00000033804 1 116-138
GENEFINDER00000033818 7 26-48,55-77,97-119,140-162,166-188,449-466,499-521
Sequence
Target Sequence 
>C. ELEGANS:179789_AT
tttgctatcctgtcatcatgtatcattcctgtgatcgatggaaaacggaaattaatttat
ttctgaaattcgtaaagattcggaatcctgtaataaattcaaaagtgtatccaatcagaa
atagttatggaatatcgatgagtgaagaaaatacaatgagcaatcactttgatcatctac
gagatgcatgggaaaccaaccaaggaaaagggaagtttcaataccgtactcatcattcaa
aacagaagaaagaagtatcaatagaaaagtttttgaaaatgattcgttttcataacaacg
cggaaccatcagaaattgcttggtcttgtatgtccccaatctctcgttgctgtggtatcg
gatgttgccccaaaacttcaaagtctcaatcggaaagtattttccatagtgtctttggtt
atatgtgtggtggtttcatgttcctgtgttgtcttgttcttcttctctcacttgtcatgt
ttctgtgcaatgacgtatggcatcgttacatcccgtggtttccatcatctccaagaccaa
cggcaactc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTTGCTATCCTGTCATCATGTATCA 55 669 872 Antisense
GGGAAGTTTCAATACCGTACTCATC 218 491 1081 Antisense
AACGCGGAACCATCAGAAATTGCTT 613 145 1168 Antisense
AATTGCTTGGTCTTGTATGTCCCCA 630 177 1185 Antisense
AATCTCTCGTTGCTGTGGTATCGGA 642 169 1209 Antisense
TATCGGATGTTGCCCCAAAACTTCA 333 655 1227 Antisense
TGTGTGGTGGTTTCATGTTCCTGTG 378 555 1295 Antisense
TTCATGTTCCTGTGTTGTCTTGTTC 267 689 1306 Antisense
TTCTCTCACTTGTCATGTTTCTGTG 127 693 1334 Antisense
TGACGTATGGCATCGTTACATCCCG 60 571 1362 Antisense
TCATCTCCAAGACCAACGGCAACTC 559 617 1396 Antisense
Sequence Source Affymetrix Proprietary Database