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[179786_at]

Description Y51A2B.1 /REP_DB=WormBase Gene ID /WP=CE16655 /TR=O45956 /GB=CAA16392.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 39      6grp_high1_10_10 > 82      4grp_highest_8_8 > 40      4grp_high_8_8 > 43      6grp_highest_nonorm > 54      6grp_total > 81      4grp_total > 52      6grp_highest_sub > 04      6grp_high1_sub > 04      6grp_total_sub > Hat      6grp_rule_based > S4      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 217
1 2 3 4 range
A 254.4
(2.1)
P 		278.1
(3)
P 		163.8
(-1.4)
P 		121.3
(-3)
P 		157
B 276.9
(1.9)
P 		318
(3)
P 		195.3
(-0.4)
P 		101.3
(-3)
P 		217
C 266.7
(3)
P 		241.8
(1.7)
P 		216.6
(0.3)
P 		154.6
(-3)
P 		112
avr 266
(2.5) 		279.3
(3) 		191.9
(-0.4) 		125.7
(-3) 		154

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1775
1 2 3 4 5 6 range
A 398.5
(-2.9)
P 		414.1
(-2.9)
P 		716.5
(-1.8)
P 		2132.3
(3)
P 		1076.8
(-0.6)
P 		376.6
(-3)
P 		1756
B 455.1
(-3)
P 		580.4
(-2.5)
P 		975.8
(-0.8)
P 		1892.9
(3)
P 		1525.3
(1.5)
P 		645.5
(-2.2)
P 		1438
C 357.5
(-3)
P 		565
(-2.3)
P 		598.7
(-2.1)
P 		2051.7
(3)
P 		927.4
(-1)
P 		873.8
(-1.2)
P 		1694
avr 403.7
(-3) 		519.8
(-2.6) 		763.7
(-1.7) 		2025.6
(3) 		1176.5
(-0.1) 		632
(-2.2) 		1622
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 75
1 2 3 4 range
A 92.6
(3)
P 		60.4
(0.4)
P 		42.8
(-1)
P 		17.8
(-3)
P 		75
B 88.3
(3)
P 		78.5
(2.1)
P 		45.2
(-0.9)
P 		21.6
(-3)
P 		67
C 88.3
(3)
P 		69.5
(1.2)
P 		75.5
(1.8)
P 		26.1
(-3)
P 		62
avr 89.7
(3) 		69.5
(1.2) 		54.5
(-0.1) 		21.8
(-3) 		68

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 546
1 2 3 4 5 6 range
A 73.5
(-3)
P 		147.3
(-2.1)
P 		156
(-1.9)
P 		540.8
(3)
P 		324.9
(0.2)
P 		91.7
(-2.8)
P 		467
B 158.3
(-3)
P 		193.2
(-2.5)
P 		236.9
(-2)
P 		501.4
(1.5)
P 		619.7
(3)
P 		240.7
(-1.9)
P 		461
C 132.5
(-3)
P 		172.4
(-2.1)
P 		152.4
(-2.6)
P 		412.6
(3)
P 		300.1
(0.6)
P 		292.5
(0.4)
P 		280
avr 121.4
(-3) 		171
(-2.2) 		181.8
(-2) 		484.9
(3) 		414.9
(1.8) 		208.3
(-1.6) 		364
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179786_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13051
Sequence Type Exemplar sequence
Representative Public ID Y51A2B.1 NCBI
Target Description Y51A2B.1 /REP_DB=WormBase Gene ID /WP=CE16655 /TR=O45956 /GB=CAA16392.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075192(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075192 NCBI Caenorhabditis elegans Y51A2B.1 (Y51A2B.1) mRNA, complete cds. 11/11 None
SNAP00000034637 ENSEMBL cdna:SNAP chromosome:CEL140:V:18375672:18379329:1 11/11 None
GENEFINDER00000034650 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:18375697:18379329:1 11/11 None
Y51A2B.1 ENSEMBL cdna:known chromosome:CEL140:V:18375697:18376050:1 gene:Y51A2B.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:18375696-18376050(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y51A2B.1
Entrez Gene 190126 Entrez gene
SwissProt O45956 EMBL-EBI
WormBase CE16655 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
8152 metabolism inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
16491 oxidoreductase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA16393 Hypothetical protein Y51A2B.2 [Caenorhabditis elegans] ref|NP_507594.1| Y51A2B.2 [Caenorhabditis elegans] 1.0E-160
blast AAB52299 Hypothetical protein ZC196.9 [Caenorhabditis elegans] ref|NP_505246.1| ZC196.9 [Caenorhabditis elegans] 1.0E-120
blast AAB88362 Hypothetical protein F58F6.6 [Caenorhabditis elegans] ref|NP_500067.1| F58F6.6 [Caenorhabditis elegans] 1.0E-120
blast CAA16392 Hypothetical protein Y51A2B.1 [Caenorhabditis elegans] ref|NP_507593.1| Y51A2B.1 [Caenorhabditis elegans] 6.0E-51
blast CAA16392 Hypothetical protein Y51A2B.1 [Caenorhabditis elegans] ref|NP_507593.1| Y51A2B.1 [Caenorhabditis elegans] 1.0E-43
blast CAE56203 Hypothetical protein CBG23827 [Caenorhabditis briggsae] 2.0E-32
blast CAE56203 Hypothetical protein CBG23827 [Caenorhabditis briggsae] 3.0E-31
blast AAB65376 Hypothetical protein C07G3.2 [Caenorhabditis elegans] ref|NP_503983.1| C07G3.2 [Caenorhabditis elegans] 2.0E-23
Protein Domains
Database ID Description E-Value
Pfam IPR006874 EMBL-EBI Protein of unknown function DUF621 1.2E-12
Pfam IPR006874 EMBL-EBI Protein of unknown function DUF621 1.3E-86
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000034650 7 212-229,264-286,306-328,348-370,418-440,453-475,490-509
Sequence
Target Sequence 
>C. ELEGANS:179786_AT
atgtaccttgcctgtctggcaaaattctctcagaacgtggagctccgcaagatgctcttc
agaactcaggacatgtacctcgtggaggcttctggaaatgatgcaatttggggaaacgga
atctggaaagaagacaaaaggtctgatgacgtggcaaattggcatggaacaaattatttg
ggagaaatactggatcgaattcgcggggaattgattggaaaacccgagtttgccgctgaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGTACCTTGCCTGTCTGGCAAAAT 128 45 13 Antisense
TGCCTGTCTGGCAAAATTCTCTCAG 605 585 21 Antisense
TTCTCTCAGAACGTGGAGCTCCGCA 701 691 37 Antisense
TGGAGCTCCGCAAGATGCTCTTCAG 701 547 50 Antisense
GATGCTCTTCAGAACTCAGGACATG 506 413 63 Antisense
GAACTCAGGACATGTACCTCGTGGA 321 349 74 Antisense
ATGTACCTCGTGGAGGCTTCTGGAA 4 47 85 Antisense
GACAAAAGGTCTGATGACGTGGCAA 701 363 145 Antisense
GACGTGGCAAATTGGCATGGAACAA 536 377 160 Antisense
AATACTGGATCGAATTCGCGGGGAA 690 169 198 Antisense
TGGAAAACCCGAGTTTGCCGCTGAA 299 547 228 Antisense
Sequence Source Affymetrix Proprietary Database