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[179784_at]

Description C50D2.7 /REP_DB=WormBase Gene ID /WP=CE08892 /TR=O44793 /GB=AAB94954.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 47      6grp_high1_10_10 > 74      4grp_highest_8_8 > 25      4grp_high_8_8 > 59      6grp_highest_nonorm > 72      6grp_total > 64      4grp_total > 60      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 222
1 2 3 4 range
A 350.3
(0.9)
P 		367.4
(1.7)
P 		395.1
(3)
P 		269.7
(-3)
P 		125
B 402.5
(3)
P 		335.4
(1.2)
P 		390.9
(2.7)
P 		180.6
(-3)
P 		222
C 362.9
(3)
P 		337.6
(0.3)
P 		362.6
(3)
P 		307
(-3)
P 		56
avr 371.9
(2.5) 		346.8
(1.3) 		382.9
(3) 		252.4
(-3) 		131

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 285
1 2 3 4 5 6 range
A 252.6
(-3)
P 		349.9
(-1)
P 		537.5
(3)
P 		457.3
(1.3)
P 		360
(-0.7)
P 		503.3
(2.3)
P 		285
B 315.8
(-3)
P 		375.5
(-1.2)
P 		513.1
(3)
P 		407.2
(-0.2)
P 		376.9
(-1.1)
P 		436.4
(0.7)
P 		197
C 329.4
(-1.8)
P 		384.1
(-0.2)
P 		442.1
(1.5)
P 		489.3
(2.9)
P 		289.5
(-3)
P 		493.4
(3)
P 		204
avr 299.3
(-3) 		369.8
(-0.9) 		497.6
(3) 		451.3
(1.6) 		342.1
(-1.7) 		477.7
(2.4) 		198
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 90
1 2 3 4 range
A 127.5
(3)
P 		79.8
(-0.3)
P 		103.3
(1.4)
P 		39.5
(-3)
P 		88
B 128.4
(3)
P 		82.8
(-0)
P 		90.6
(0.5)
P 		38.5
(-3)
P 		90
C 120.1
(2.5)
P 		97.1
(0.6)
P 		126.4
(3)
P 		51.8
(-3)
P 		75
avr 125.3
(3) 		86.6
(0.2) 		106.8
(1.6) 		43.3
(-3) 		82

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 119
1 2 3 4 5 6 range
A 46.6
(-3)
P 		124.4
(3)
P 		117.1
(2.4)
P 		116
(2.4)
P 		108.6
(1.8)
P 		122.5
(2.9)
P 		78
B 109.9
(-2.8)
P 		125
(-1.1)
P 		124.6
(-1.2)
P 		107.8
(-3)
P 		153.1
(2)
P 		162.7
(3)
P 		55
C 122.1
(-0.6)
P 		117.2
(-1)
P 		112.5
(-1.4)
P 		98.4
(-2.6)
P 		93.7
(-3)
P 		165.2
(3)
P 		72
avr 92.9
(-3) 		122.2
(0.1) 		118.1
(-0.4) 		107.4
(-1.5) 		118.5
(-0.3) 		150.1
(3) 		57
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179784_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4275
Sequence Type Exemplar sequence
Representative Public ID C50D2.7 NCBI
Target Description C50D2.7 /REP_DB=WormBase Gene ID /WP=CE08892 /TR=O44793 /GB=AAB94954.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_182154(9)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_182154 NCBI Caenorhabditis elegans C50D2.9 (C50D2.9) mRNA, complete cds. 9/11 None
SNAP00000026468 ENSEMBL cdna:SNAP chromosome:CEL140:II:88638:91519:-1 9/11 None
GENEFINDER00000026481 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:88051:91519:-1 11/11 None
C50D2.9 ENSEMBL cdna:known chromosome:CEL140:II:88565:91519:-1 gene:C50D2.9 9/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:88415-95256(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C50D2.9
Entrez Gene 259414 Entrez gene
SwissProt Q8ITY6 EMBL-EBI
WormBase CE36803 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:267308_AT expressed protein at
CANINE:1585324_AT similar to Malonyl CoA-acyl carrier protein transacylase, mitochondrial precursor (MCT) (Mitochondrial malonyltransferase) cfa
CANINE_2:CFA.6640.1.A1_AT similar to Malonyl CoA-acyl carrier protein transacylase, mitochondrial precursor (MCT) (Mitochondrial malonyltransferase) cfa
CANINE_2:CFAAFFX.2289.1.S1_AT similar to Malonyl CoA-acyl carrier protein transacylase, mitochondrial precursor (MCT) (Mitochondrial malonyltransferase) cfa
DROSOPHILA_2:1641256_AT dm
DROSGENOME1:153302_AT dm
HG-U95AV2:36891_AT malonyl-CoA:acyl carrier protein transacylase, mitochondrial hs
HU35KSUBB:RC_T03864_AT malonyl-CoA:acyl carrier protein transacylase, mitochondrial hs
U133_X3P:HS.7436.0.S1_3P_A_AT malonyl-CoA:acyl carrier protein transacylase, mitochondrial hs
HG-U133A_2:213132_S_AT malonyl-CoA:acyl carrier protein transacylase, mitochondrial hs
HG-U133_PLUS_2:213132_S_AT malonyl-CoA:acyl carrier protein transacylase, mitochondrial hs
HG-U133A:213132_S_AT malonyl-CoA:acyl carrier protein transacylase, mitochondrial hs
HG-U95B:44882_AT malonyl-CoA:acyl carrier protein transacylase, mitochondrial hs
MG-U74BV2:116366_AT cDNA sequence BC025519 mm
MOE430A:1452216_AT cDNA sequence BC025519 mm
MOUSE430A_2:1452216_AT cDNA sequence BC025519 mm
MOUSE430_2:1452216_AT cDNA sequence BC025519 mm
RAE230B:1380316_AT similar to bK1191B2.3.1 (PUTATIVE novel Acyl Transferase similar to C. elegans C50D2.7) (variant 1) (predicted) rn
RAT230_2:1380316_AT similar to bK1191B2.3.1 (PUTATIVE novel Acyl Transferase similar to C. elegans C50D2.7) (variant 1) (predicted) rn
RAT230_2:1374361_AT Similar to bK1191B2.3.1 (PUTATIVE novel Acyl Transferase similar to C. elegans C50D2.7) (variant 1) (predicted) rn
RAE230A:1374361_AT Similar to bK1191B2.3.1 (PUTATIVE novel Acyl Transferase similar to C. elegans C50D2.7) (variant 1) (predicted) rn
RAE230A:1375241_AT Similar to bK1191B2.3.1 (PUTATIVE novel Acyl Transferase similar to C. elegans C50D2.7) (variant 1) (predicted) rn
RAT230_2:1375241_AT Similar to bK1191B2.3.1 (PUTATIVE novel Acyl Transferase similar to C. elegans C50D2.7) (variant 1) (predicted) rn
RG-U34B:RC_AA956174_AT Similar to bK1191B2.3.1 (PUTATIVE novel Acyl Transferase similar to C. elegans C50D2.7) (variant 1) (predicted) rn
RG-U34B:RC_AA998027_AT Similar to bK1191B2.3.1 (PUTATIVE novel Acyl Transferase similar to C. elegans C50D2.7) (variant 1) (predicted) rn
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
8152 metabolism inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
16740 transferase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast NP_871954 C50D2.9 [Caenorhabditis elegans] gb|AAN73874.2| Hypothetical protein C50D2.9 [Caenorhabditis elegans] 0.0
blast T32780 hypothetical protein C50D2.7 - Caenorhabditis elegans 0.0
blast CAE62813 Hypothetical protein CBG06989 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR001227 EMBL-EBI Acyl transferase domain 2.1E-6
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_871954.2 1 388-410
C50D2.9 1 388-410
GENEFINDER00000026481 2 385-407,420-437
Sequence
Target Sequence 
>C. ELEGANS:179784_AT
aactatctgtattgcggtgtccgagtaattggcggatcagaaacgtgcctaaaatatttg
gaagaaaatcaagagaaatacaatattcaagtgatgaagagacttgcagtttcggcagct
tttcatacacgacaaatggagtctgccgtcgaacaggtggcaaaagctttccaaaacgtg
gagattcatcgtccggtgtgcaatgtctggtcaaattatagtggaaaagtgatgtcatcg
aagaagggagacgttcgtggagctgtcgccaaacaaatcaattcaccggttcgatgggaa
cagattcaacaatcgctgttcagaaaacatcagaacgaagcattcccccgcttctacgaa
gtcggtgcaggacgtcagctcgttgctgaattgatttttttcattgtttgtgttatattt
atgttagccttatatattatgataatgagtgcccgttttattctaaaatcattcaacaaa
caactttttatttttgcccaattcttttttcagccatctgtc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AACTATCTGTATTGCGGTGTCCGAG 124 139 2140 Antisense
GCAGTTTCGGCAGCTTTTCATACAC 673 311 2245 Antisense
TGGAGTCTGCCGTCGAACAGGTGGC 458 549 2276 Antisense
ACGTGGAGATTCATCGTCCGGTGTG 411 95 2315 Antisense
TCGTCCGGTGTGCAATGTCTGGTCA 92 605 2328 Antisense
GTTCGTGGAGCTGTCGCCAAACAAA 355 443 2392 Antisense
ATCAATTCACCGGTTCGATGGGAAC 657 25 2416 Antisense
AACATCAGAACGAAGCATTCCCCCG 332 133 2465 Antisense
CGAAGTCGGTGCAGGACGTCAGCTC 220 253 2496 Antisense
TAATGAGTGCCCGTTTTATTCTAAA 193 637 2582 Antisense
CCAATTCTTTTTTCAGCCATCTGTC 94 277 2637 Antisense
Sequence Source Affymetrix Proprietary Database