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[179783_at]

Description C50D2.3 /REP_DB=WormBase Gene ID /WP=CE08888 /TR=O44797 /GB=AAB94951.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 77      4grp_total > 18      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 33
1 2 3 4 range
A 1
(-3)
A 		14.7
(-0.5)
A 		2
(-2.8)
A 		34
(3)
A 		33
B 2.1
(0.7)
A 		2.4
(2.1)
A 		1.3
(-3)
A 		2.6
(3)
A 		1
C 2
(-3)
A 		1.9
(-3)
A 		2.3
(-2.9)
A 		34
(3)
A 		32
avr 1.7
(-3) 		6.3
(-1.7) 		1.9
(-2.9) 		23.5
(3) 		22

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 115
1 2 3 4 5 6 range
A 2.3
(-2.9)
A 		1.1
(-3)
A 		3.6
(-2.8)
A 		2.4
(-2.9)
A 		2.6
(-2.9)
A 		78.2
(3)
P 		77
B 1.4
(-3)
A 		2.1
(-3)
A 		1.6
(-3)
A 		12.8
(-2.3)
A 		33.2
(-0.9)
A 		92.6
(3)
P 		91
C 5.6
(-2.8)
A 		1.3
(-3)
A 		3.1
(-2.9)
A 		30.9
(-1.5)
A 		52.8
(-0.3)
P 		116.4
(3)
P 		115
avr 3.1
(-2.9) 		1.5
(-3) 		2.8
(-2.9) 		15.4
(-2.1) 		29.5
(-1.2) 		95.7
(3) 		94
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 5
1 2 3 4 range
A 0.4
(-3)
A 		3.2
(0.7)
A 		0.5
(-2.9)
A 		5
(3)
A 		5
B 0.7
(3)
A 		0.6
(1.5)
A 		0.3
(-3)
A 		0.5
(0)
A 		0
C 0.7
(-2.8)
A 		0.5
(-3)
A 		0.8
(-2.7)
A 		5.7
(3)
A 		5
avr 0.6
(-2.8) 		1.4
(-1.3) 		0.5
(-3) 		3.7
(3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 39
1 2 3 4 5 6 range
A 0.4
(-3)
A 		0.4
(-3)
A 		0.8
(-2.9)
A 		0.6
(-2.9)
A 		0.8
(-2.9)
A 		19
(3)
P 		19
B 0.5
(-3)
A 		0.7
(-2.9)
A 		0.4
(-3)
A 		3.4
(-2.5)
A 		13.5
(-0.7)
A 		34.5
(3)
P 		34
C 2.1
(-2.7)
A 		0.4
(-3)
A 		0.8
(-2.9)
A 		6.2
(-2.1)
A 		17.1
(-0.4)
P 		39
(3)
P 		39
avr 1
(-2.9) 		0.5
(-3) 		0.7
(-3) 		3.4
(-2.4) 		10.5
(-1) 		30.8
(3) 		30
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179783_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5410
Sequence Type Exemplar sequence
Representative Public ID C50D2.3 NCBI
Target Description C50D2.3 /REP_DB=WormBase Gene ID /WP=CE08888 /TR=O44797 /GB=AAB94951.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061260(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061260 NCBI Caenorhabditis elegans C50D2.3 (C50D2.3) mRNA, complete cds. 11/11 None
SNAP00000026475 ENSEMBL cdna:SNAP chromosome:CEL140:II:106258:107438:1 11/11 None
GENEFINDER00000026486 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:106258:107438:1 11/11 None
C50D2.3 ENSEMBL cdna:known chromosome:CEL140:II:106258:107438:1 gene:C50D2.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:106257-107438(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C50D2.3
Entrez Gene 183651 Entrez gene
SwissProt O44797 EMBL-EBI
WormBase CE08888 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
5515 protein binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast NP_493661 C50D2.3 [Caenorhabditis elegans] gb|AAB94951.1| Hypothetical protein C50D2.3 [Caenorhabditis elegans] 6.0E-72
blast CAE62809 Hypothetical protein CBG06985 [Caenorhabditis briggsae] 1.0E-52
blast CAE58972 Hypothetical protein CBG02245 [Caenorhabditis briggsae] 7.0E-10
Sequence
Target Sequence 
>C. ELEGANS:179783_AT
atgagcactacaggatctgcaccgcccaattcaaaacttaaatcagttgaggacacggat
gatgataggactctcgctgaagacgatcaaaacgatcaaaactctgggagtatggatcac
cgatttgagagaatcaaggtgacactgatgatgactcagggcaagaagttcggacttgga
atagtatctgttcatcaacgtatactggtctgcaaagtggaaaatgaatctctagtagcc
ggggttctcaagtacggagatcagattatcgagattaacaagaaaaacgtcttaaacaaa
attgattgtaagaagcggttgatgcaatgcctcaaggataaaggacaagttgatattatc
attgtgcgcccaaagactgcagatgctgttaccatgattgaacaagaaattcaactctcg
caacaaccg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGAGCACTACAGGATCTGCACCGC 693 43 13 Antisense
GGATGATGATAGGACTCTCGCTGAA 281 513 69 Antisense
AACTCTGGGAGTATGGATCACCGAT 534 141 112 Antisense
GACTCAGGGCAAGAAGTTCGGACTT 461 373 165 Antisense
GTTCATCAACGTATACTGGTCTGCA 176 445 202 Antisense
AATCTCTAGTAGCCGGGGTTCTCAA 369 169 239 Antisense
GAAGCGGTTGATGCAATGCCTCAAG 493 343 324 Antisense
GTTGATATTATCATTGTGCGCCCAA 577 437 361 Antisense
GTGCGCCCAAAGACTGCAGATGCTG 95 479 376 Antisense
GCAGATGCTGTTACCATGATTGAAC 225 313 391 Antisense
AGAAATTCAACTCTCGCAACAACCG 567 71 417 Antisense
Sequence Source Affymetrix Proprietary Database