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[179782_s_at]

Description W01F3.1A /REP_DB=WormBase Gene ID /WP=CE26981 /TR=O45879 /GB=CAB07292.2 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 89      6grp_high1_10_10 > 98      4grp_highest_8_8 > 12      4grp_high_8_8 > 31      6grp_highest_nonorm > 94      6grp_total > 98      4grp_total > 32      6grp_highest_sub > In      6grp_high1_sub > In      6grp_total_sub > Increase      6grp_rule_based > S5      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 323
1 2 3 4 range
A 271.8
(-3)
P 		465.8
(0.6)
P 		559.1
(2.4)
P 		592.9
(3)
P 		321
B 296.6
(-3)
P 		437
(-0.2)
P 		594.4
(3)
P 		584.6
(2.8)
P 		298
C 334.8
(-3)
P 		394.1
(-1.2)
P 		532.2
(2.9)
P 		537.1
(3)
P 		202
avr 301.1
(-3) 		432.3
(-0.1) 		561.9
(2.8) 		571.5
(3) 		270

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 497
1 2 3 4 5 6 range
A 473.7
(-1.8)
P 		373.7
(-3)
P 		606.8
(-0.2)
P 		478.7
(-1.7)
P 		867.8
(3)
P 		870.3
(3)
P 		497
B 427.2
(-3)
P 		512.3
(-1.8)
P 		616.9
(-0.3)
P 		584.4
(-0.8)
P 		846.9
(2.9)
P 		855.7
(3)
P 		429
C 407.3
(-3)
P 		474.5
(-2)
P 		430
(-2.7)
P 		593
(-0.2)
P 		802.5
(3)
P 		764.4
(2.4)
P 		395
avr 436.1
(-3) 		453.5
(-2.7) 		551.2
(-1.3) 		552
(-1.3) 		839.1
(3) 		830.1
(2.9) 		403
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 99
1 2 3 4 range
A 99
(-1.8)
P 		101.1
(-1.6)
P 		146.2
(3)
P 		86.8
(-3)
P 		59
B 94.6
(-3)
P 		107.9
(-1.1)
P 		137.7
(3)
P 		124.6
(1.2)
P 		43
C 110.8
(-1.7)
P 		113.3
(-1.6)
P 		185.5
(3)
P 		90.6
(-3)
P 		95
avr 101.5
(-2.9) 		107.4
(-2.3) 		156.5
(3) 		100.7
(-3) 		56

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 257
1 2 3 4 5 6 range
A 87.3
(-3)
P 		132.9
(-1.4)
P 		132.1
(-1.5)
P 		121.4
(-1.8)
P 		261.9
(3)
P 		211.9
(1.3)
P 		175
B 148.6
(-3)
P 		170.5
(-2.3)
P 		149.8
(-3)
P 		154.8
(-2.8)
P 		344.1
(3)
P 		319.1
(2.2)
P 		196
C 151
(-1.3)
P 		144.8
(-1.6)
P 		109.4
(-3)
P 		119.3
(-2.6)
P 		259.7
(3)
P 		255.9
(2.8)
P 		150
avr 129
(-3) 		149.4
(-2.2) 		130.4
(-2.9) 		131.8
(-2.9) 		288.6
(3) 		262.3
(2) 		160
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 179782_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13504
Sequence Type Exemplar sequence
Representative Public ID W01F3.1A NCBI
Target Description W01F3.1A /REP_DB=WormBase Gene ID /WP=CE26981 /TR=O45879 /GB=CAB07292.2 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075589(11), NM_075590(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075589 NCBI Caenorhabditis elegans W01F3.1a (W01F3.1) mRNA, complete cds. 11/11 None
NM_075590 NCBI Caenorhabditis elegans W01F3.1b (W01F3.1) mRNA, complete cds. 11/11 None
SNAP00000024488 ENSEMBL cdna:SNAP chromosome:CEL140:V:20654879:20657575:1 11/11 None
GENEFINDER00000024492 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:20649297:20657575:1 11/11 None
W01F3.1a ENSEMBL cdna:known chromosome:CEL140:V:20652701:20657770:1 gene:W01F3.1 11/11 None
W01F3.1b ENSEMBL cdna:known chromosome:CEL140:V:20652728:20657575:1 gene:W01F3.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:20651536-20657575(+) 100.0 100.0
Public Domain and Genome References
Ensembl W01F3.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB07292 Hypothetical protein W01F3.1a [Caenorhabditis elegans] ref|NP_507990.1| W01F3.1a [Caenorhabditis elegans] 0.0
blast CAE61692 Hypothetical protein CBG05639 [Caenorhabditis briggsae] 0.0
blast CAB07293 Hypothetical protein W01F3.1b [Caenorhabditis elegans] ref|NP_507991.1| W01F3.1b [Caenorhabditis elegans] 0.0
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000024492 1 695-717
Sequence
Target Sequence 
>C. ELEGANS:179782_S_AT
tcccaactttctacagtggtccggtcggaaaagggcccggcgtttcttggagagccaact
gcactgcttttatcgaaaattcctcctccaaacttcccatccgaacagaaaatcagtgga
aaagtgcactttttgccgaaaaagggaatggaaaatgtggatttggatgagaatagtgga
gtttctatatacttgatggataaggtgcaagacattgattcaccaaagatcaagaattcg
cttgaggttttcattggttttgacgggaagataaaaatcaccaatggacagctcaaaaat
ctaccgtactacgagacaaaatccgtcgggcaactaccggatagtgattgttatggattt
gaagtgaccgatatgggatggagagtcaagttggacgcctggactgcagagtgtggcaat
caaaaattgcgaaaacgaagaaccgtgtccattgagctggatacaccgtttcaaaaaaac
cgacacctgcgaaacgtcgtggtatcaaaaaaaggtgattcagctgtcgatttccttctc
gaagagcttcaacacaaaaacgcctacaactaccgtaatccatgg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCCCAACTTTCTACAGTGGTCCGGT 647 587 1351 Antisense
GAGAGCCAACTGCACTGCTTTTATC 338 395 1400 Antisense
GACAAAATCCGTCGGGCAACTACCG 587 365 1665 Antisense
GGAGAGTCAAGTTGGACGCCTGGAC 407 519 1730 Antisense
GACGCCTGGACTGCAGAGTGTGGCA 73 381 1744 Antisense
ACGAAGAACCGTGTCCATTGAGCTG 66 93 1785 Antisense
CCATTGAGCTGGATACACCGTTTCA 10 271 1799 Antisense
GACACCTGCGAAACGTCGTGGTATC 82 367 1832 Antisense
TTCAGCTGTCGATTTCCTTCTCGAA 686 687 1869 Antisense
AGAGCTTCAACACAAAAACGCCTAC 634 69 1893 Antisense
CGCCTACAACTACCGTAATCCATGG 654 255 1911 Antisense
Sequence Source Affymetrix Proprietary Database