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[179780_s_at]

Description EGAP9.3 /REP_DB=WormBase Gene ID /WP=CE27912 /TR=P91201 /GB=AAC25845.2 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 82      6grp_total > 73      4grp_total > 05      6grp_high1_sub > 04      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 81
1 2 3 4 range
A 141.4
(-1.1)
P 		124
(-3)
A 		124.9
(-2.9)
A 		179
(3)
P 		55
B 123.5
(0.6)
P 		136
(3)
A 		117.8
(-0.4)
A 		104.1
(-3)
A 		32
C 157.5
(0.7)
P 		112.5
(-3)
A 		139.6
(-0.8)
A 		185.1
(3)
P 		73
avr 140.8
(0.1) 		124.2
(-3) 		127.4
(-2.4) 		156.1
(3) 		32

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 157
1 2 3 4 5 6 range
A 156.4
(-1.6)
A 		146.2
(-2)
A 		150.5
(-1.8)
P 		270
(3)
P 		120.6
(-3)
P 		128.1
(-2.7)
A 		149
B 121
(-3)
P 		120.2
(-3)
P 		206.4
(1.6)
P 		125.6
(-2.7)
P 		232.4
(3)
P 		144.6
(-1.7)
P 		112
C 117.3
(-2.7)
A 		113
(-3)
P 		160.2
(0.8)
P 		188.4
(3)
P 		176.3
(2)
P 		162.7
(1)
P 		75
avr 131.6
(-2.6) 		126.5
(-3) 		172.4
(1) 		194.7
(3) 		176.4
(1.4) 		145.1
(-1.4) 		68
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 30
1 2 3 4 range
A 51.5
(3)
P 		26.9
(-2.8)
A 		32.6
(-1.5)
A 		26.2
(-3)
P 		25
B 39.4
(3)
P 		33.6
(1)
A 		27.3
(-1.2)
A 		22.2
(-3)
A 		17
C 52.1
(3)
P 		32.3
(-2.7)
A 		48.6
(2)
A 		31.2
(-3)
P 		21
avr 47.7
(3) 		30.9
(-1.8) 		36.2
(-0.3) 		26.5
(-3) 		21

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 66
1 2 3 4 5 6 range
A 28.8
(-3)
A 		52
(0.5)
A 		32.8
(-2.4)
P 		68.5
(3)
P 		36.4
(-1.9)
P 		31.2
(-2.6)
A 		40
B 42.1
(-2.1)
P 		40
(-2.3)
P 		50.1
(-1.4)
P 		33.3
(-3)
P 		94.4
(3)
P 		53.9
(-1)
P 		61
C 43.5
(-0.6)
A 		34.5
(-3)
P 		40.8
(-1.3)
P 		37.9
(-2.1)
P 		57
(3)
P 		54.5
(2.3)
P 		23
avr 38.1
(-3) 		42.2
(-2) 		41.2
(-2.2) 		46.6
(-0.9) 		62.6
(3) 		46.5
(-0.9) 		25
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 179780_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11262
Sequence Type Exemplar sequence
Representative Public ID EGAP9.3 NCBI
Target Description EGAP9.3 /REP_DB=WormBase Gene ID /WP=CE27912 /TR=P91201 /GB=AAC25845.2 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072271
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072271 NCBI Caenorhabditis elegans EGAP9.3 (EGAP9.3) mRNA, complete cds. None
SNAP00000042229 ENSEMBL cdna:SNAP chromosome:CEL140:V:6580819:6581721:-1 None
EGAP9.3 ENSEMBL cdna:known chromosome:CEL140:V:6580819:6582665:-1 gene:EGAP9.3 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:6579110-6582133(-) 94.9 100.0
Public Domain and Genome References
Gene Title
Ensembl EGAP9.3
Entrez Gene 179048 Entrez gene
SwissProt P91201 EMBL-EBI
WormBase CE27912 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
5975 carbohydrate metabolism inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5794 Golgi apparatus inferred from electronic annotation QuickGO AmiGO
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
8107 galactoside 2-alpha-L-fucosyltransferase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast NP_504672 EGAP9.3 [Caenorhabditis elegans] gb|AAC25845.2| Hypothetical protein EGAP9.3 [Caenorhabditis elegans] 0.0
blast NP_504671 FUcosyl Transferase family member (fut-2) [Caenorhabditis elegans] gb|AAC25844.1| Fucosyl transferase protein 2 [Caenorhabditis elegans] 1.0E-147
blast AAB53053 Hypothetical protein T28F2.1 [Caenorhabditis elegans] ref|NP_491192.1| T28F2.1 [Caenorhabditis elegans] 1.0E-133
blast NP_504672 EGAP9.3 [Caenorhabditis elegans] gb|AAC25845.2| Hypothetical protein EGAP9.3 [Caenorhabditis elegans] 2.0E-92
blast NP_504671 FUcosyl Transferase family member (fut-2) [Caenorhabditis elegans] gb|AAC25844.1| Fucosyl transferase protein 2 [Caenorhabditis elegans] 1.0E-74
blast CAI46608 Hypothetical protein F17B5.6 [Caenorhabditis elegans] ref|NP_001021393.1| F17B5.6 [Caenorhabditis elegans] 1.0E-54
Protein Domains
Database ID Description E-Value
Pfam IPR002516 EMBL-EBI Glycosyl transferase, family 11 3.5E-6
Pfam IPR002516 EMBL-EBI Glycosyl transferase, family 11 3.5E-6
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_504672.1 1 13-35
EGAP9.3 1 13-35
Sequence
Target Sequence 
>C. ELEGANS:179780_S_AT
aacacgctggaactgatgcggtctttacaattcgagcaattgattatttgtattccctgc
atcctggtctcatatatctcttcagtaatgatccagaatgggttaggaagagaatagctg
aacaacttgactatcatggtgatgttaaaattatggaaacaccaaaagacgcagccatca
aggacttatatttctcccaggttcattgtgattctgtgttgattactgctccatcgtcaa
cattcggttggtggattggatatatgtcaaagaatcaatcaaatgtatattatcgagata
ttcaagaaactgaggatatggtcaaatatcaaatgttggaagaagatttcttcccgcgca
cgtggaaaaagttgggaatgtcacgaaacgggttaatcatcacaaattttggaattttgg
aatatcagatttttgaaattacggaattttggaatttttttccaaaatttggaaacatcg
agtatgtgaacggaagtgcagatcgtccggcagacttcagagttcaaggattgtttaagc
cgatggaagagcacgagacaaatgaaaaaagtcagagccaagagagccgaacatt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AACACGCTGGAACTGATGCGGTCTT 679 135 407 Antisense
GATGCGGTCTTTACAATTCGAGCAA 163 413 421 Antisense
ATCCTGGTCTCATATATCTCTTCAG 546 39 467 Antisense
GGAAACACCAAAAGACGCAGCCATC 72 529 561 Antisense
GACGCAGCCATCAAGGACTTATATT 45 381 574 Antisense
GACTTATATTTCTCCCAGGTTCATT 304 371 589 Antisense
GATTCTGTGTTGATTACTGCTCCAT 228 433 616 Antisense
GCTCCATCGTCAACATTCGGTTGGT 414 297 634 Antisense
GAACGGAAGTGCAGATCGTCCGGCA 382 347 894 Antisense
GATCGTCCGGCAGACTTCAGAGTTC 329 417 907 Antisense
GTCAGAGCCAAGAGAGCCGAACATT 363 461 977 Antisense
Sequence Source Affymetrix Proprietary Database