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[179779_at]

Description C08E3.5 /REP_DB=WormBase Gene ID /WP=CE08008 /TR=O17195 /GB=AAB70963.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 95      4grp_total > 02      6grp_total_sub > Increase      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 507
1 2 3 4 range
A 57.3
(-2.6)
A
43.1
(-2.8)
A
33.1
(-3)
A
368.7
(3)
P
336
B 38.4
(-2.6)
A
29.9
(-2.7)
A
8
(-3)
A
515.3
(3)
P
507
C 61
(-2.5)
A
23.6
(-3)
A
24.8
(-3)
A
456.5
(3)
P
433
avr 52.2
(-2.6)
32.2
(-2.9)
22
(-3)
446.8
(3)
425

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 104
1 2 3 4 5 6 range
A 53.7
(-1.4)
A
64.9
(0.1)
A
42.1
(-3)
A
62.2
(-0.2)
A
71.7
(1.1)
A
85.7
(3)
A
44
B 75.9
(-1.4)
A
51.8
(-2.9)
A
51
(-3)
A
120.4
(1.4)
A
145.8
(3)
A
111.3
(0.8)
A
95
C 43.9
(-3)
A
61.4
(-1.6)
A
84.2
(0.3)
A
45.8
(-2.8)
A
78.7
(-0.2)
P
117.4
(3)
A
74
avr 57.8
(-3)
59.4
(-2.8)
59.1
(-2.8)
76.1
(-0.7)
98.7
(2.2)
104.8
(3)
47
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 108
1 2 3 4 range
A 20.9
(-1.4)
A
9.4
(-2.9)
A
8.7
(-3)
A
54
(3)
P
45
B 12.3
(-2.4)
A
7.4
(-2.7)
A
1.9
(-3)
A
109.8
(3)
P
108
C 20.2
(-1.9)
A
6.8
(-3)
A
8.6
(-2.8)
A
77
(3)
P
70
avr 17.8
(-2.1)
7.9
(-2.9)
6.4
(-3)
80.3
(3)
74

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 50
1 2 3 4 5 6 range
A 9.9
(-2.7)
A
23.1
(3)
A
9.2
(-3)
A
15.8
(-0.2)
A
21.6
(2.4)
A
20.9
(2.1)
A
14
B 26.4
(-1.2)
A
17.3
(-2.4)
A
12.4
(-3)
A
31.9
(-0.5)
A
59.2
(3)
A
41.5
(0.7)
A
47
C 16.3
(-1.6)
A
18.7
(-1.1)
A
21.4
(-0.6)
A
9.2
(-3)
A
25.5
(0.2)
P
39.3
(3)
A
30
avr 17.5
(-2.1)
19.7
(-1.5)
14.3
(-3)
19
(-1.7)
35.4
(3)
33.9
(2.6)
21
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179779_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4306
Sequence Type Exemplar sequence
Representative Public ID C08E3.5 NCBI
Target Description C08E3.5 /REP_DB=WormBase Gene ID /WP=CE08008 /TR=O17195 /GB=AAB70963.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061608(11)
Transcript Assignments
Representative
Transcript
Description Matching Probes Related Probesets by Grade
NM_061608 NCBI Caenorhabditis elegans C08E3.5 (C08E3.5) mRNA, complete cds. 11/11 None
SNAP00000042045 ENSEMBL cdna:SNAP chromosome:CEL140:II:1607967:1609005:-1 11/11 None
GENEFINDER00000042065 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:1607967:1609005:-1 11/11 None
C08E3.5 ENSEMBL cdna:known chromosome:CEL140:II:1607996:1609005:-1 gene:C08E3.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:1607965-1609004(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C08E3.5
Entrez Gene 182397 Entrez gene
SwissProt O17195 EMBL-EBI
WormBase CE34667 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB70963 Hypothetical protein C08E3.5 [Caenorhabditis elegans] ref|NP_494009.2| C08E3.5 [Caenorhabditis elegans] 1.0E-140
blast AAB70963 Hypothetical protein C08E3.5 [Caenorhabditis elegans] ref|NP_494009.2| C08E3.5 [Caenorhabditis elegans] 1.0E-138
blast AAB70966 Hypothetical protein C08E3.6 [Caenorhabditis elegans] ref|NP_494010.1| C08E3.6 [Caenorhabditis elegans] 1.0E-74
blast AAB70966 Hypothetical protein C08E3.6 [Caenorhabditis elegans] ref|NP_494010.1| C08E3.6 [Caenorhabditis elegans] 5.0E-63
blast AAB70969 Hypothetical protein C08E3.10 [Caenorhabditis elegans] ref|NP_494015.2| C08E3.10 [Caenorhabditis elegans] 1.0E-59
Protein Domains
Database ID Description E-Value
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 5.0E-32
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 7.2E-12
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 7.2E-29
Sequence
Target Sequence
>C. ELEGANS:179779_AT
aatttgtggctggtgaggactatgtagagctatgcaacaaggatctcaagttgatgattg
aaaatcgaaaggttcaattggaaacattcctacctgtttttgacggaattgaaaacgaag
cccgtaaaaatttcattgacggcattgagaaaactctcaaatcagcggaaagcttgtcat
taaaaactatccaatcacaccacgtttcattccaagaacttgcccaactgttgcccattt
tccctgcgaaaaaattggaatatctttatttatacgggaggatggatggcccaggatatg
agcagctgattaacctggatcaatggaaacaagctagaaaatttcatggattttctaaga
atttgattattccaattgaacactttttcatttcgagaggtttgatgttcgtctcgaaac
tttcacagaagctgattgatagatcttctcactttgttcatgctgggattcacttcagag
atatgaacatcagaaagctgaaaagagaatttgctgaggagcgaaatttcgttcaccaaa
ctcctga


BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position
Strandedness
AATTTGTGGCTGGTGAGGACTATGT 583 161 317 Antisense
GAAACATTCCTACCTGTTTTTGACG 593 355 397 Antisense
AAAAACTATCCAATCACACCACGTT 636 129 498 Antisense
ACACCACGTTTCATTCCAAGAACTT 355 109 513 Antisense
TGGATGGCCCAGGATATGAGCAGCT 702 549 599 Antisense
TGAGCAGCTGATTAACCTGGATCAA 366 569 615 Antisense
GAACACTTTTTCATTTCGAGAGGTT 433 351 694 Antisense
GATGTTCGTCTCGAAACTTTCACAG 444 409 720 Antisense
TAGATCTTCTCACTTTGTTCATGCT 507 653 756 Antisense
GTTCATGCTGGGATTCACTTCAGAG 112 445 772 Antisense
GAAATTTCGTTCACCAAACTCCTGA 526 349 839 Antisense
Sequence Source Affymetrix Proprietary Database