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[179778_at]

Description F27D9.2 /REP_DB=WormBase Gene ID /WP=CE04450 /TR=Q19845 /GB=AAA93387.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 14      4grp_highest_8_8 > 33      4grp_high_8_8 > 58      6grp_total > 03      4grp_total > 61      6grp_rule_based > S2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 417
1 2 3 4 range
A 630.5
(3)
P 		487.6
(0.7)
P 		506
(1)
P 		252.7
(-3)
P 		378
B 597.8
(2.7)
P 		513.1
(1.5)
P 		616.5
(3)
P 		213.9
(-3)
P 		403
C 596
(2.9)
P 		481.1
(0.8)
P 		600.2
(3)
P 		274.8
(-3)
P 		325
avr 608.1
(3) 		493.9
(1.1) 		574.2
(2.4) 		247.1
(-3) 		361

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1067
1 2 3 4 5 6 range
A 1122.9
(3)
P 		1035.1
(2.4)
P 		559.3
(-1.1)
P 		656.1
(-0.4)
P 		427.2
(-2)
P 		293.2
(-3)
M 		830
B 1064.8
(3)
P 		993.3
(2.5)
P 		521.4
(-0.6)
P 		573.2
(-0.3)
P 		503.4
(-0.8)
P 		167
(-3)
P 		898
C 947.6
(1.3)
P 		1233.9
(3)
P 		699.7
(-0.2)
P 		615
(-0.7)
P 		417.1
(-1.9)
P 		228.4
(-3)
P 		1006
avr 1045.1
(2.7) 		1087.4
(3) 		593.5
(-0.5) 		614.8
(-0.3) 		449.2
(-1.5) 		229.5
(-3) 		858
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 193
1 2 3 4 range
A 229.6
(3)
P 		105.8
(-0.9)
P 		132.3
(-0)
P 		37
(-3)
P 		193
B 190.6
(3)
P 		126.7
(0.4)
P 		142.8
(1)
P 		45.6
(-3)
P 		145
C 197.3
(2.6)
P 		138.3
(0.4)
P 		209.2
(3)
P 		46.3
(-3)
P 		163
avr 205.8
(3) 		123.6
(-0) 		161.4
(1.4) 		43
(-3) 		163

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 314
1 2 3 4 5 6 range
A 207
(-0.3)
P 		368.1
(3)
P 		121.8
(-2)
P 		166.4
(-1.1)
P 		128.9
(-1.8)
P 		71.4
(-3)
M 		297
B 370.5
(3)
P 		330.6
(2.2)
P 		126.6
(-1.7)
P 		151.8
(-1.3)
P 		204.5
(-0.2)
P 		62.3
(-3)
P 		308
C 351.2
(2.5)
P 		376.5
(3)
P 		178.1
(-1)
P 		123.7
(-2.1)
P 		135
(-1.8)
P 		76.5
(-3)
P 		300
avr 309.6
(2) 		358.4
(3) 		142.2
(-1.5) 		147.3
(-1.4) 		156.1
(-1.2) 		70.1
(-3) 		288
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179778_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15977
Sequence Type Exemplar sequence
Representative Public ID F27D9.2 NCBI
Target Description F27D9.2 /REP_DB=WormBase Gene ID /WP=CE04450 /TR=Q19845 /GB=AAA93387.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076895(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076895 NCBI Caenorhabditis elegans F27D9.2 (F27D9.2) mRNA, complete cds. 11/11 None
GENEFINDER00000002730 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:7672934:7676068:1 11/11 None
SNAP00000002725 ENSEMBL cdna:SNAP chromosome:CEL140:X:7675219:7676068:1 10/11 None
F27D9.2.2 ENSEMBL cdna:known chromosome:CEL140:X:7672930:7676220:1 gene:F27D9.2 11/11 None
F27D9.2.1 ENSEMBL cdna:known chromosome:CEL140:X:7672932:7676220:1 gene:F27D9.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:7672932-7676067(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F27D9.2
Entrez Gene 181028 Entrez gene
SwissProt Q19845 EMBL-EBI
WormBase CE04450 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA93387 Hypothetical protein F27D9.2 [Caenorhabditis elegans] ref|NP_509296.1| F27D9.2 [Caenorhabditis elegans] 0.0
blast CAE70257 Hypothetical protein CBG16758 [Caenorhabditis briggsae] 0.0
blast CAE63963 Hypothetical protein CBG08551 [Caenorhabditis briggsae] 1.0E-108
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_509296.1 12 41-63,78-100,107-129,139-161,173-195,210-232,265-285,305-327,339-358,396-418,438-455,460-479
F27D9.2.2 12 41-63,78-100,107-129,139-161,173-195,210-232,265-285,305-327,339-358,396-418,438-455,460-479
F27D9.2.1 12 41-63,78-100,107-129,139-161,173-195,210-232,265-285,305-327,339-358,396-418,438-455,460-479
GENEFINDER00000002730 12 41-63,78-100,107-129,139-161,173-195,210-232,265-285,305-327,339-358,396-418,438-455,460-479
SNAP00000002725 5 15-37,44-66,102-124,137-154,159-178
Sequence
Target Sequence 
>C. ELEGANS:179778_AT
agttcataccgttgctggttccattgcggcattcatgttcatttgtttcatatttaccgg
agttcgaagatacatgaaaaaccgagtattcacatttatttcgctgtccatcccgttagt
gtggctcattgcaacttatccatacaagttctacagtgatcatgttcaacttatgacaaa
tggaagcaatgccaattgtgacactgagaaatattcttggtgtacagatctcactaaagt
caatgaatacgtatattatattggattcattatggtgtttggtgttgcattttcgtttat
gaatatcaccgttactacactgttttccaaagtaataggcccgagaccacagggaactta
tcaaggtgtgtaccaaatggccggatcatttgggcgaatgcttgctccacttttgatgag
ctacgtttacacattatatggcccttcaattccatggttgatactaattgtgaacctggt
agtccttattagtgcg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGTTCATACCGTTGCTGGTTCCATT 186 63 942 Antisense
GGTTCCATTGCGGCATTCATGTTCA 706 505 958 Antisense
TTCACATTTATTTCGCTGTCCATCC 388 687 1030 Antisense
CATCCCGTTAGTGTGGCTCATTGCA 256 209 1050 Antisense
GGCTCATTGCAACTTATCCATACAA 198 539 1064 Antisense
GGTGTTTGGTGTTGCATTTTCGTTT 196 499 1215 Antisense
TATCACCGTTACTACACTGTTTTCC 398 659 1245 Antisense
ATAGGCCCGAGACCACAGGGAACTT 634 17 1276 Antisense
GAATGCTTGCTCCACTTTTGATGAG 297 331 1337 Antisense
ACACATTATATGGCCCTTCAATTCC 501 109 1370 Antisense
GAACCTGGTAGTCCTTATTAGTGCG 540 345 1413 Antisense
Sequence Source Affymetrix Proprietary Database