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[179777_at]

Description T08B6.2 /REP_DB=WormBase Gene ID /WP=CE17223 /TR=O44529 /GB=AAB94154.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 83      4grp_total > 02      6grp_total_sub > Hat      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 614
1 2 3 4 range
A 56.2
(-2.8)
P 		72.8
(-2.6)
A 		36.8
(-3)
A 		603.5
(3)
P 		567
B 100.7
(-2.3)
A 		40.9
(-2.9)
A 		29
(-3)
A 		642.8
(3)
P 		614
C 72.3
(-2.7)
P 		48.3
(-3)
A 		44.6
(-3)
P 		532.3
(3)
P 		488
avr 76.4
(-2.6) 		54
(-2.8) 		36.8
(-3) 		592.9
(3) 		556

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 136
1 2 3 4 5 6 range
A 88
(-1.8)
A 		72.1
(-3)
A 		113.3
(-0)
P 		140.4
(2)
P 		154.8
(3)
P 		82.6
(-2.2)
A 		83
B 49.3
(-3)
A 		83.9
(-1.1)
A 		61.8
(-2.3)
A 		160.1
(3)
P 		138.7
(1.8)
P 		115.3
(0.6)
P 		111
C 23.9
(-3)
A 		98.9
(0.8)
P 		71.3
(-0.6)
P 		143.8
(3)
P 		119.7
(1.8)
P 		78
(-0.3)
A 		120
avr 53.7
(-3) 		85
(-1) 		82.1
(-1.2) 		148.1
(3) 		137.7
(2.3) 		92
(-0.6) 		94
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 130
1 2 3 4 range
A 20.5
(-2.2)
P 		15.8
(-2.5)
A 		9.6
(-3)
A 		88.3
(3)
P 		79
B 32.1
(-1.8)
A 		10.1
(-2.8)
A 		6.7
(-3)
A 		137
(3)
P 		130
C 23.9
(-2.2)
P 		13.9
(-3)
A 		15.6
(-2.9)
P 		89.8
(3)
P 		76
avr 25.5
(-2.1) 		13.3
(-2.8) 		10.6
(-3) 		105
(3) 		94

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 48
1 2 3 4 5 6 range
A 16.2
(-3)
A 		25.7
(-1.1)
A 		24.7
(-1.3)
P 		35.6
(0.8)
P 		46.7
(3)
P 		20.1
(-2.2)
A 		31
B 17.2
(-2.7)
A 		27.9
(-1.1)
A 		15
(-3)
A 		42.4
(1)
P 		56.4
(3)
P 		43
(1.1)
P 		41
C 8.8
(-3)
A 		30.2
(1.3)
P 		18.1
(-1.1)
P 		28.9
(1)
P 		38.7
(3)
P 		26.1
(0.5)
A 		30
avr 14.1
(-3) 		27.9
(-0.5) 		19.3
(-2.1) 		35.6
(0.9) 		47.3
(3) 		29.7
(-0.2) 		33
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179777_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10461
Sequence Type Exemplar sequence
Representative Public ID T08B6.2 NCBI
Target Description T08B6.2 /REP_DB=WormBase Gene ID /WP=CE17223 /TR=O44529 /GB=AAB94154.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068266(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068266 NCBI Caenorhabditis elegans T08B6.2 (T08B6.2) mRNA, complete cds. 11/11 None
SNAP00000024944 ENSEMBL cdna:SNAP chromosome:CEL140:IV:4894362:4899127:-1 9/11 None
GENEFINDER00000024949 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:4894362:4898182:-1 9/11 None
T08B6.2 ENSEMBL cdna:known chromosome:CEL140:IV:4894362:4896819:-1 gene:T08B6.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:4894367-4896825(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T08B6.2
Entrez Gene 188276 Entrez gene
SwissProt O44529 EMBL-EBI
WormBase CE17223 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_500667 T08B6.2 [Caenorhabditis elegans] gb|AAB94154.1| Hypothetical protein T08B6.2 [Caenorhabditis elegans] 0.0
blast NP_500667 T08B6.2 [Caenorhabditis elegans] gb|AAB94154.1| Hypothetical protein T08B6.2 [Caenorhabditis elegans] 1.0E-177
blast NP_500667 T08B6.2 [Caenorhabditis elegans] gb|AAB94154.1| Hypothetical protein T08B6.2 [Caenorhabditis elegans] 1.0E-124
blast CAB04358 Hypothetical protein F38A1.5 [Caenorhabditis elegans] ref|NP_741307.1| F38A1.5 [Caenorhabditis elegans] 4.0E-66
blast AAV34784 Hypothetical protein Y54G2A.8b [Caenorhabditis elegans] ref|NP_001023508.1| Y54G2A.8b [Caenorhabditis elegans] 5.0E-66
blast CAB04358 Hypothetical protein F38A1.5 [Caenorhabditis elegans] ref|NP_741307.1| F38A1.5 [Caenorhabditis elegans] 2.0E-65
blast AAV34784 Hypothetical protein Y54G2A.8b [Caenorhabditis elegans] ref|NP_001023508.1| Y54G2A.8b [Caenorhabditis elegans] 2.0E-65
Protein Domains
Database ID Description E-Value
Pfam IPR008164 EMBL-EBI Repeat of unknown function XGLTT 9.1E-8
Sequence
Target Sequence 
>C. ELEGANS:179777_AT
gtgtatttccatctggtggtactcaatcaaaagcactatacaaattaacatcccgaacaa
acggaatatgtgcttttcaggaagattcgcaattttcagaagtaagcgatttcataaata
tttcttccaaatattatgatggttggcatttactgtcacatattgttggctccttaccaa
tatctggtactccatatccaatctactcagtaaatccacgcgtttctggtctcgggtcac
tcgttttgccttcattatctgtacctttcagtggaagattttattttgtagtaactgttc
aagatcacggacccattgacacattcagatctatcaatctttcatggtacaacgcaaaat
ctagatcttcaaatcattttctgatttcaaatggacagaaatacgaaatcaaccgagaag
agtggtttgatcttgatccagtcatctataacatgaccctgaattactcatatttaacat
ttcaagacattcaaataagagtctacagttcgagaccaccagagga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTGTATTTCCATCTGGTGGTACTCA 81 485 623 Antisense
GATGGTTGGCATTTACTGTCACATA 70 407 760 Antisense
GTCACATATTGTTGGCTCCTTACCA 274 465 777 Antisense
TGGTACTCCATATCCAATCTACTCA 662 551 807 Antisense
AGTAAATCCACGCGTTTCTGGTCTC 41 63 831 Antisense
CGTTTTGCCTTCATTATCTGTACCT 90 247 864 Antisense
AACTGTTCAAGATCACGGACCCATT 258 143 915 Antisense
ACGGACCCATTGACACATTCAGATC 31 97 929 Antisense
CTATCAATCTTTCATGGTACAACGC 703 211 953 Antisense
GATCTTGATCCAGTCATCTATAACA 69 421 1051 Antisense
TCTACAGTTCGAGACCACCAGAGGA 41 611 1124 Antisense
Sequence Source Affymetrix Proprietary Database