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[179776_at]

Description T13C2.1 /REP_DB=WormBase Gene ID /WP=CE04937 /TR=Q22456 /GB=AAA81137.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 91      4grp_total > 49      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 289
1 2 3 4 range
A 56.5
(-2.9)
A 		284.1
(2.9)
P 		289.1
(3)
P 		52
(-3)
A 		237
B 93.7
(-1.8)
A 		316.2
(3)
P 		290.7
(2.4)
P 		39.2
(-3)
A 		277
C 83.9
(-2.6)
A 		314.1
(2.7)
P 		328.2
(3)
P 		64.6
(-3)
A 		264
avr 78
(-2.4) 		304.8
(3) 		302.7
(3) 		51.9
(-3) 		253

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 102
1 2 3 4 5 6 range
A 89
(-3)
A 		190.9
(3)
P 		108.8
(-1.8)
A 		187.3
(2.8)
A 		146.9
(0.4)
A 		122.8
(-1)
A 		102
B 112.4
(-2.8)
A 		171.2
(3)
P 		110.3
(-3)
A 		170.3
(2.9)
P 		169.7
(2.9)
P 		139.6
(-0.1)
P 		61
C 95.1
(-2.8)
A 		163.6
(1.6)
P 		91.8
(-3)
A 		186.3
(3)
P 		130.4
(-0.5)
P 		166.6
(1.7)
M 		95
avr 98.8
(-3) 		175.2
(2.6) 		103.6
(-2.7) 		181.3
(3) 		149
(0.7) 		143
(0.2) 		83
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 107
1 2 3 4 range
A 20.6
(-1.9)
A 		61.7
(1.8)
P 		75.6
(3)
P 		7.6
(-3)
A 		68
B 29.9
(-1.1)
A 		78.1
(3)
P 		67.4
(2.1)
P 		8.4
(-3)
A 		70
C 27.8
(-2)
A 		90.3
(1.6)
P 		114.4
(3)
P 		10.9
(-3)
A 		104
avr 26.1
(-1.7) 		76.7
(2.3) 		85.8
(3) 		9
(-3) 		77

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 53
1 2 3 4 5 6 range
A 16.4
(-3)
A 		67.9
(3)
P 		23.7
(-2.1)
A 		47.5
(0.6)
A 		44.3
(0.3)
A 		29.9
(-1.4)
A 		52
B 39.1
(-1.2)
A 		57
(1.3)
P 		26.8
(-3)
A 		45.1
(-0.4)
P 		68.9
(3)
P 		52.1
(0.6)
P 		42
C 35.2
(-0.8)
A 		49.9
(1.9)
P 		23.4
(-3)
A 		37.5
(-0.4)
P 		42.2
(0.5)
P 		55.8
(3)
M 		32
avr 30.2
(-2) 		58.3
(3) 		24.6
(-3) 		43.4
(0.3) 		51.8
(1.8) 		45.9
(0.8) 		34
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179776_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4341
Sequence Type Exemplar sequence
Representative Public ID T13C2.1 NCBI
Target Description T13C2.1 /REP_DB=WormBase Gene ID /WP=CE04937 /TR=Q22456 /GB=AAA81137.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062988(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062988 NCBI Caenorhabditis elegans T13C2.2 (T13C2.2) mRNA, complete cds. 11/11 None
GENEFINDER00000019086 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:6798236:6799172:1 11/11 None
T13C2.2 ENSEMBL cdna:known chromosome:CEL140:II:6792161:6799195:1 gene:T13C2.2 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000019073 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Public Domain and Genome References
Gene Title
Ensembl T13C2.2
Entrez Gene 188470 Entrez gene
SwissProt Q6AHP7 EMBL-EBI
WormBase CE37046 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAT81189 Hypothetical protein T13C2.2 [Caenorhabditis elegans] ref|NP_495389.2| T13C2.2 [Caenorhabditis elegans] 0.0
blast CAE65971 Hypothetical protein CBG11155 [Caenorhabditis briggsae] 0.0
blast T16862 hypothetical protein T13C2.2 - Caenorhabditis elegans 1.0E-159
blast T16863 hypothetical protein T13C2.1 - Caenorhabditis elegans 1.0E-91
blast AAT81189 Hypothetical protein T13C2.2 [Caenorhabditis elegans] ref|NP_495389.2| T13C2.2 [Caenorhabditis elegans] 2.0E-91
blast CAE65971 Hypothetical protein CBG11155 [Caenorhabditis briggsae] 1.0E-73
Sequence
Target Sequence 
>C. ELEGANS:179776_AT
acagttcccaaaatctaccacaagttctaattccaagtggtaaccaaattcggcagtctc
ctgtgaaaaacttccaagattcatttctaccgacgcgccgacagaatgatggagctcttg
ataaatatgatactcatgttgaccggtttgcatccactggaccagcaaattcaatcaaga
ttcaaggagatctatcaaatcttcaacttccaccaactagaaacactggaaacattgcaa
ttcagccatcaaaagttgattcaatagttggcgcaatgccaacaatgcctccatcggcag
gttacggtacttatgctccagcaccaacagcaattattccaaaagtaattgaaagaattc
tatctccggaagagattactggatcttatcgacaacaacaaattcgcccaatttacaatc
aaagaatgccaaatggccaacttcgaaacgtg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACAGTTCCCAAAATCTACCACAAGT 227 107 1712 Antisense
GGTAACCAAATTCGGCAGTCTCCTG 372 503 1750 Antisense
GCAGTCTCCTGTGAAAAACTTCCAA 504 311 1764 Antisense
TTCCAAGATTCATTTCTACCGACGC 405 697 1783 Antisense
CTACCGACGCGCCGACAGAATGATG 41 227 1798 Antisense
GATACTCATGTTGACCGGTTTGCAT 478 423 1840 Antisense
GGTTTGCATCCACTGGACCAGCAAA 72 507 1856 Antisense
AATGCCTCCATCGGCAGGTTACGGT 17 167 1995 Antisense
AGGTTACGGTACTTATGCTCCAGCA 624 57 2010 Antisense
CAGCACCAACAGCAATTATTCCAAA 129 203 2030 Antisense
GCCAAATGGCCAACTTCGAAACGTG 70 279 2139 Antisense
Sequence Source Affymetrix Proprietary Database