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[179775_at]

Description F58H7.6 /REP_DB=WormBase Gene ID /WP=CE17934 /TR=O45092 /GB=AAC02594.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 82      4grp_total > 40      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 55
1 2 3 4 range
A 10.7
(-2.2)
A 		3.3
(-3)
A 		58.5
(3)
A 		17.2
(-1.5)
A 		55
B 29.4
(0.3)
A 		44.2
(2.3)
A 		49.9
(3)
A 		3.6
(-3)
A 		46
C 6.8
(-3)
A 		6.6
(-3)
A 		7.5
(-2.8)
A 		40.7
(3)
A 		34
avr 15.6
(-3) 		18
(-2.4) 		38.6
(3) 		20.5
(-1.7) 		23

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 73
1 2 3 4 5 6 range
A 19.5
(-3)
A 		34.6
(-1.4)
A 		34.2
(-1.4)
A 		21.5
(-2.8)
A 		75.1
(3)
A 		50.5
(0.3)
A 		56
B 3.7
(-3)
A 		18
(-1)
A 		7.1
(-2.5)
A 		46.4
(3)
A 		3.5
(-3)
A 		8
(-2.4)
A 		43
C 31.3
(0.3)
A 		22
(-0.7)
A 		55.3
(3)
A 		49.4
(2.3)
A 		36.5
(0.9)
A 		2
(-3)
A 		53
avr 18.2
(-3) 		24.9
(-1.1) 		32.2
(1) 		39.1
(3) 		38.4
(2.8) 		20.2
(-2.4) 		21
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 15
1 2 3 4 range
A 3.9
(-1.7)
A 		0.7
(-3)
A 		15.3
(3)
A 		2.5
(-2.3)
A 		15
B 9.4
(1.8)
A 		10.9
(2.6)
A 		11.6
(3)
A 		0.8
(-3)
A 		11
C 2.2
(-2.6)
A 		1.9
(-3)
A 		2.6
(-2.2)
A 		6.9
(3)
A 		5
avr 5.2
(-1.3) 		4.5
(-2) 		9.8
(3) 		3.4
(-3) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 22
1 2 3 4 5 6 range
A 3.6
(-3)
A 		12.3
(-0.3)
A 		7.4
(-1.8)
A 		5.5
(-2.4)
A 		22.7
(3)
A 		12.3
(-0.3)
A 		19
B 1.3
(-3)
A 		6
(-0.4)
A 		1.7
(-2.8)
A 		12.3
(3)
A 		1.4
(-2.9)
A 		3
(-2.1)
A 		11
C 11.6
(1.9)
A 		6.7
(-0.3)
A 		14.1
(3)
A 		9.9
(1.1)
A 		11.8
(2)
A 		0.7
(-3)
A 		13
avr 5.5
(-2.8) 		8.3
(-0.3) 		7.7
(-0.9) 		9.2
(0.5) 		12
(3) 		5.3
(-3) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179775_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11242
Sequence Type Exemplar sequence
Representative Public ID F58H7.6 NCBI
Target Description F58H7.6 /REP_DB=WormBase Gene ID /WP=CE17934 /TR=O45092 /GB=AAC02594.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067612(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067612 NCBI Caenorhabditis elegans F58H7.6 (F58H7.6) mRNA, complete cds. 11/11 None
SNAP00000022281 ENSEMBL cdna:SNAP chromosome:CEL140:IV:916523:919498:1 11/11 None
GENEFINDER00000022292 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:916523:919498:1 11/11 None
F58H7.6 ENSEMBL cdna:known chromosome:CEL140:IV:914139:919498:1 gene:F58H7.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Public Domain and Genome References
Gene Title
Ensembl F58H7.6
Entrez Gene 186553 Entrez gene
SwissProt O45092 EMBL-EBI
WormBase CE17934 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6310 DNA recombination inferred from electronic annotation QuickGO AmiGO
6508 proteolysis inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3677 DNA binding inferred from electronic annotation QuickGO AmiGO
4190 aspartic-type endopeptidase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAC02594 Hypothetical protein F58H7.6 [Caenorhabditis elegans] ref|NP_500013.1| F58H7.6 [Caenorhabditis elegans] 0.0
blast AAC02594 Hypothetical protein F58H7.6 [Caenorhabditis elegans] ref|NP_500013.1| F58H7.6 [Caenorhabditis elegans] 1.0E-172
blast CAB60574 Hypothetical protein Y37H2A.3 [Caenorhabditis elegans] ref|NP_507535.1| Y37H2A.3 [Caenorhabditis elegans] 1.0E-152
blast XP_795781 PREDICTED: similar to zn-finger, CCHC type and RNA-directed DNA polymerase and Integrase, catalytic domain containing protein (3J949) [Strongylocentrotus purpuratus] 1.0E-125
blast XP_795715 PREDICTED: similar to zn-finger, CCHC type and RNA-directed DNA polymerase and Integrase, catalytic domain containing protein (3J949) [Strongylocentrotus purpuratus] 1.0E-124
blast CAA20985 Hypothetical protein Y38H6C.5 [Caenorhabditis elegans] ref|NP_507948.1| Y38H6C.5 [Caenorhabditis elegans] 2.0E-78
Protein Domains
Database ID Description E-Value
Pfam IPR001584 EMBL-EBI Integrase, catalytic domain 4.4E-23
Pfam IPR000477 EMBL-EBI RNA-directed DNA polymerase (Reverse transcriptase) 1.5E-16
Pfam IPR005162 EMBL-EBI Retrotransposon gag protein 1.4E-23
Pfam IPR001584 EMBL-EBI Integrase, catalytic domain 4.0E-25
Pfam IPR000477 EMBL-EBI RNA-directed DNA polymerase (Reverse transcriptase) 6.4E-39
Pfam IPR001584 EMBL-EBI Integrase, catalytic domain 4.6E-26
Pfam IPR000477 EMBL-EBI RNA-directed DNA polymerase (Reverse transcriptase) 6.1E-10
Sequence
Target Sequence 
>C. ELEGANS:179775_AT
ttcctgatttttggtcgagaccccgtgtttgcaatcgataaaatcatgcatccatcccca
ccaaaggaaggagaagaagtcgacattccggcttggaaagagcacctcatcacaactcta
cgtttggctcgaaaggaggctgctgaaagatccctgaaagaacaagaagctcgacagaaa
gtggcaaacgttggagctaaaggatcgaagatcgtggttggagatcgagtcttcttccaa
aatcacaaatcgaaagcgaatttgtcgcggaaaatggtacttccatggatcggagagttc
gaagtcattagcatcgatcatcccaaagcagtcatcaaggacttggaacatccatcaaaa
cctgaaaggacagtgcacctgaatcaaatcaaaaagattctagaaagagaagatccaggc
gccgcactcaaagattcggacgattccatctccgaagtagaagcaatcaaagaggagctt
gctacagctcaacctg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTCCTGATTTTTGGTCGAGACCCCG 64 699 3643 Antisense
TCGAGACCCCGTGTTTGCAATCGAT 617 593 3657 Antisense
AGAAGTCGACATTCCGGCTTGGAAA 342 153 3717 Antisense
TCATCACAACTCTACGTTTGGCTCG 440 619 3749 Antisense
AGGAGGCTGCTGAAAGATCCCTGAA 354 57 3776 Antisense
GGAGATCGAGTCTTCTTCCAAAATC 699 517 3862 Antisense
AGTCATTAGCATCGATCATCCCAAA 462 59 3945 Antisense
GAAAGAGAAGATCCAGGCGCCGCAC 418 359 4045 Antisense
GGCGCCGCACTCAAAGATTCGGACG 174 543 4060 Antisense
GGACGATTCCATCTCCGAAGTAGAA 198 525 4080 Antisense
GAGGAGCTTGCTACAGCTCAACCTG 309 403 4114 Antisense
Sequence Source Affymetrix Proprietary Database