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[179773_at]

Description B0478.3 /REP_DB=WormBase Gene ID /WP=CE06711 /TR=Q17508 /GB=AAA98725.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 68      4grp_highest_8_8 > 15      4grp_high_8_8 > 06      6grp_total > 57      4grp_total > 10      6grp_high1_sub > Cu      6grp_total_sub > Cup      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1692
1 2 3 4 range
A 138.5
(-3)
P 		249.8
(-2.6)
P 		146.9
(-3)
P 		1819.3
(3)
P 		1681
B 144.9
(-3)
P 		222.5
(-2.6)
P 		183.6
(-2.8)
P 		1402.7
(3)
P 		1258
C 142.9
(-2.9)
P 		205.5
(-2.7)
P 		127.8
(-3)
P 		1613.5
(3)
P 		1486
avr 142.1
(-3) 		225.9
(-2.7) 		152.8
(-3) 		1611.8
(3) 		1470

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 171
1 2 3 4 5 6 range
A 87.3
(-1.4)
P 		112.4
(-0.3)
P 		47.1
(-3)
P 		80.5
(-1.6)
P 		47.4
(-3)
P 		193.6
(3)
P 		147
B 80.8
(-0.2)
P 		103
(0.8)
P 		22.4
(-3)
M 		30.5
(-2.6)
A 		70.2
(-0.7)
P 		148.3
(3)
P 		126
C 118.4
(0)
P 		169.9
(2.7)
P 		76.1
(-2.2)
M 		61.1
(-3)
A 		73.5
(-2.3)
P 		174.8
(3)
P 		114
avr 95.5
(-0.7) 		128.4
(0.9) 		48.5
(-3) 		57.4
(-2.6) 		63.7
(-2.3) 		172.2
(3) 		124
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 261
1 2 3 4 range
A 50.4
(-2.7)
P 		54.2
(-2.6)
P 		38.4
(-3)
P 		266.3
(3)
P 		228
B 46.2
(-2.9)
P 		55
(-2.7)
P 		42.5
(-3)
P 		298.9
(3)
P 		256
C 47.3
(-2.9)
P 		59.1
(-2.6)
P 		44.5
(-3)
P 		272.1
(3)
P 		228
avr 48
(-2.8) 		56.1
(-2.6) 		41.8
(-3) 		279.1
(3) 		237

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 53
1 2 3 4 5 6 range
A 16.1
(-2.1)
P 		40
(1.8)
P 		10.3
(-3)
P 		20.4
(-1.4)
P 		14.3
(-2.3)
P 		47.1
(3)
P 		37
B 28.1
(-0.3)
P 		34.3
(0.5)
P 		5.4
(-3)
M 		8.1
(-2.7)
A 		28.5
(-0.2)
P 		55.3
(3)
P 		50
C 43.9
(1.1)
P 		51.9
(2.1)
P 		19.4
(-2.1)
M 		12.3
(-3)
A 		23.8
(-1.5)
P 		58.5
(3)
P 		46
avr 29.4
(-0.5) 		42.1
(1.4) 		11.7
(-3) 		13.6
(-2.7) 		22.2
(-1.5) 		53.6
(3) 		42
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179773_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10046
Sequence Type Exemplar sequence
Representative Public ID B0478.3 NCBI
Target Description B0478.3 /REP_DB=WormBase Gene ID /WP=CE06711 /TR=Q17508 /GB=AAA98725.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068673(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068673 NCBI Caenorhabditis elegans B0478.3 (B0478.3) mRNA, complete cds. 11/11 None
B0478.3 ENSEMBL cdna:known chromosome:CEL140:IV:6963859:6964546:-1 gene:B0478.3 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000022637 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:6963864-6964552(-) 97.81 100.0
Public Domain and Genome References
Gene Title
Ensembl B0478.3
Entrez Gene 182001 Entrez gene
SwissProt Q17508 EMBL-EBI
WormBase CE06711 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
16042 lipid catabolism inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4623 phospholipase A2 activity inferred from electronic annotation QuickGO AmiGO
5509 calcium ion binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAA98725 Hypothetical protein B0478.3 [Caenorhabditis elegans] ref|NP_501074.1| B0478.3 [Caenorhabditis elegans] 3.0E-86
blast CAE61772 Hypothetical protein CBG05732 [Caenorhabditis briggsae] 8.0E-29
blast CAE56164 Hypothetical protein CBG23784 [Caenorhabditis briggsae] 6.0E-14
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_501074.1 1 12-34
B0478.3 1 12-34
Sequence
Target Sequence 
>C. ELEGANS:179773_AT
tcctgatctacattcttgtcacttctcttattgcattcaaaatctgtgttttctgtcaac
aaactattagtattggagatactggtgtaactttggcaaccatgaataatacaattccgg
ctagcaattttagttgcggtgccaatcggttcacggaatttattccacaattgtttaaca
gcaccgagtgtaaaaatttgagagatccaatgaacgtctgctgtgaaacccacgacaact
gctacaacactcaaattggtaaagatttttgcgataatgaattttgtctatgtctaagta
cggccacagaaaagaatctttgcgcagtggatgctgccggattctgtgcagctgttcgac
tttttggagagactgcgtataacaccttgggag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCCTGATCTACATTCTTGTCACTTC 676 593 44 Antisense
TGTCACTTCTCTTATTGCATTCAAA 168 559 60 Antisense
GAGATACTGGTGTAACTTTGGCAAC 338 397 119 Antisense
TTGCGGTGCCAATCGGTTCACGGAA 88 677 177 Antisense
GAGAGATCCAATGAACGTCTGCTGT 378 395 243 Antisense
GTCTGCTGTGAAACCCACGACAACT 399 471 259 Antisense
CACGACAACTGCTACAACACTCAAA 39 201 274 Antisense
GTCTATGTCTAAGTACGGCCACAGA 471 469 329 Antisense
TGCGCAGTGGATGCTGCCGGATTCT 179 583 364 Antisense
ATTCTGTGCAGCTGTTCGACTTTTT 555 9 384 Antisense
GAGACTGCGTATAACACCTTGGGAG 10 393 412 Antisense
Sequence Source Affymetrix Proprietary Database