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[179772_at]

Description F42C5.4 /REP_DB=WormBase Gene ID /WP=CE04557 /TR=Q20323 /GB=AAA81480.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 16      6grp_high1_10_10 > 50      4grp_high_8_8 > 09      6grp_highest_nonorm > 80      6grp_total > 51      4grp_total > 31      6grp_highest_sub > 03_04      6grp_high1_sub > 03_04      6grp_total_sub > Hat      6grp_rule_based > S4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 207
1 2 3 4 range
A 220.4
(3)
P 		56.9
(-2.4)
A 		39.6
(-3)
A 		170.2
(1.3)
P 		181
B 230.9
(3)
P 		74.8
(-3)
P 		83.1
(-2.7)
P 		200.2
(1.8)
P 		156
C 246.6
(3)
P 		85.2
(-2.7)
P 		77
(-3)
M 		162.1
(0)
P 		170
avr 232.6
(3) 		72.3
(-2.8) 		66.6
(-3) 		177.5
(1) 		166

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 244
1 2 3 4 5 6 range
A 171.2
(-2.3)
P 		228.9
(-0.8)
P 		373.5
(3)
P 		249.2
(-0.2)
P 		143.7
(-3)
P 		142.9
(-3)
P 		231
B 200
(-0)
P 		192.4
(-0.4)
P 		215.8
(0.6)
P 		271.9
(3)
P 		186.7
(-0.6)
P 		129.6
(-3)
P 		142
C 250.1
(0.9)
P 		241.3
(0.5)
P 		221.5
(-0.5)
P 		295.8
(3)
P 		167.2
(-3)
P 		203.8
(-1.3)
P 		129
avr 207.1
(-0.4) 		220.9
(0.3) 		270.3
(2.9) 		272.3
(3) 		165.9
(-2.6) 		158.8
(-3) 		114
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 71
1 2 3 4 range
A 80.3
(3)
P 		12.4
(-2.8)
A 		10.4
(-3)
A 		24.9
(-1.8)
P 		70
B 73.6
(3)
P 		18.5
(-3)
P 		19.3
(-2.9)
P 		42.7
(-0.4)
P 		55
C 81.6
(3)
P 		24.5
(-3)
P 		26.9
(-2.7)
M 		27.3
(-2.7)
P 		57
avr 78.5
(3) 		18.5
(-3) 		18.9
(-3) 		31.6
(-1.7) 		60

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 61
1 2 3 4 5 6 range
A 31.6
(-3)
P 		81.4
(3)
P 		81.3
(3)
P 		63.2
(0.8)
P 		43.3
(-1.6)
P 		34.8
(-2.6)
P 		50
B 69.6
(1.6)
P 		64
(0.4)
P 		52.4
(-2.1)
P 		72
(2.2)
P 		75.8
(3)
P 		48.3
(-3)
P 		28
C 92.7
(3)
P 		73.6
(0)
P 		56.4
(-2.6)
P 		59.5
(-2.2)
P 		54.1
(-3)
P 		68.2
(-0.8)
P 		39
avr 64.6
(0.8) 		73
(3) 		63.4
(0.5) 		64.9
(0.8) 		57.7
(-1.1) 		50.4
(-3) 		23
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179772_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9806
Sequence Type Exemplar sequence
Representative Public ID F42C5.4 NCBI
Target Description F42C5.4 /REP_DB=WormBase Gene ID /WP=CE04557 /TR=Q20323 /GB=AAA81480.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068761(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068761 NCBI Caenorhabditis elegans F42C5.4 (F42C5.4) mRNA, complete cds. 11/11 None
SNAP00000034677 ENSEMBL cdna:SNAP chromosome:CEL140:IV:7288164:7291031:-1 11/11 None
GENEFINDER00000034687 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:7288164:7291031:-1 11/11 None
F42C5.4 ENSEMBL cdna:known chromosome:CEL140:IV:7288070:7292111:-1 gene:F42C5.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:7288169-7292117(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F42C5.4
Entrez Gene 177501 Entrez gene
SwissProt Q20323 EMBL-EBI
WormBase CE04557 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6118 electron transport inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5489 electron transporter activity inferred from electronic annotation QuickGO AmiGO
20037 heme binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAA81480 Hypothetical protein F42C5.4 [Caenorhabditis elegans] ref|NP_501162.1| F42C5.4 [Caenorhabditis elegans] 0.0
blast CAE61852 Hypothetical protein CBG05828 [Caenorhabditis briggsae] 1.0E-165
blast CAE61852 Hypothetical protein CBG05828 [Caenorhabditis briggsae] 1.0E-125
blast AAY86296 Hypothetical protein Y54G2A.40 [Caenorhabditis elegans] 1.0E-104
Sequence
Target Sequence 
>C. ELEGANS:179772_AT
ttgcgtgttttgtgaatttcttgataagcacaaggcattgaagacaaaaccgaagatcga
aaacagtatacaaatgagacaaaatttgtctttagaattcaactattctggtctgaatga
ttttccaattcgctggcaatgttcggattgtaagaaaagattacattccaattgggtaca
ttctcaatgtgatagctcaattcccgaacattggaaaggaacctggcgtcgtggatgcaa
tcatattctaactcgaattctgcggtcaaagtgcaaatgttatgatgcaaatgcagatga
atgcgaatacaattctataactttgaagtccataaggaattacgagtttgccatgaaagt
tgcaacaatgggtttgattttccgtattctgaagtcaggaattgaagaaaatataacatg
taaaataaagagaggagaaatgctaaacacttacggacttctgaaatcaaaatgccgtta
cttttttatcaattcca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTGCGTGTTTTGTGAATTTCTTGAT 308 659 1548 Antisense
GATTTTCCAATTCGCTGGCAATGTT 659 429 1666 Antisense
ACATTCCAATTGGGTACATTCTCAA 121 105 1710 Antisense
TGTGATAGCTCAATTCCCGAACATT 440 555 1735 Antisense
GAAAGGAACCTGGCGTCGTGGATGC 481 359 1761 Antisense
ACCTGGCGTCGTGGATGCAATCATA 639 87 1768 Antisense
TTCTAACTCGAATTCTGCGGTCAAA 352 691 1793 Antisense
AAGGAATTACGAGTTTGCCATGAAA 170 161 1881 Antisense
AATGGGTTTGATTTTCCGTATTCTG 483 161 1914 Antisense
AATGCTAAACACTTACGGACTTCTG 197 167 1986 Antisense
TGCCGTTACTTTTTTATCAATTCCA 353 585 2020 Antisense
Sequence Source Affymetrix Proprietary Database