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[179771_at]

Description F36G9.15 /REP_DB=WormBase Gene ID /WP=CE15992 /TR=O45468 /GB=CAB04329.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 0      4grp_total > 02      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 103
1 2 3 4 range
A 2.3
(-3)
A 		7.7
(-2.6)
A 		4.9
(-2.8)
A 		82.6
(3)
A 		80
B 3.4
(-2.4)
A 		2.1
(-3)
A 		15.6
(3)
A 		3.9
(-2.2)
A 		14
C 15.5
(-2.3)
A 		10.3
(-2.6)
A 		2.9
(-3)
A 		105.4
(3)
A 		103
avr 7.1
(-3) 		6.7
(-3) 		7.8
(-2.9) 		64
(3) 		57

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 57
1 2 3 4 5 6 range
A 6.5
(-2.3)
A 		5.2
(-2.5)
A 		24.5
(0.4)
A 		1.5
(-3)
A 		29.9
(1.2)
A 		42.2
(3)
A 		41
B 3
(-2.5)
A 		4.7
(-2)
A 		7.1
(-1.3)
A 		22.4
(3)
A 		1.1
(-3)
A 		1.8
(-2.8)
A 		21
C 3.2
(-3)
A 		58.4
(3)
A 		10.9
(-2.2)
A 		4.7
(-2.8)
A 		15
(-1.7)
A 		4.7
(-2.8)
A 		55
avr 4.2
(-3) 		22.8
(3) 		14.2
(0.2) 		9.5
(-1.3) 		15.3
(0.6) 		16.2
(0.9) 		19
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 17
1 2 3 4 range
A 0.8
(-3)
A 		1.7
(-2.5)
A 		1.3
(-2.7)
A 		12.1
(3)
A 		11
B 1.1
(-1.8)
A 		0.5
(-3)
A 		3.6
(3)
A 		0.8
(-2.4)
A 		3
C 5.1
(-1.5)
A 		3
(-2.3)
A 		1
(-3)
A 		17.8
(3)
A 		17
avr 2.3
(-2.6) 		1.7
(-3) 		2
(-2.8) 		10.2
(3) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 17
1 2 3 4 5 6 range
A 1.2
(-2.5)
A 		1.8
(-2.2)
A 		5.3
(-0)
A 		0.4
(-3)
A 		9
(2.2)
A 		10.3
(3)
A 		10
B 1
(-2.4)
A 		1.6
(-1.8)
A 		1.7
(-1.7)
A 		5.9
(3)
A 		0.5
(-3)
A 		0.7
(-2.8)
A 		5
C 1.2
(-2.9)
A 		17.8
(3)
A 		2.8
(-2.3)
A 		0.9
(-3)
A 		4.9
(-1.6)
A 		1.6
(-2.8)
A 		17
avr 1.1
(-3) 		7.1
(3) 		3.3
(-0.8) 		2.4
(-1.7) 		4.8
(0.7) 		4.2
(0.1) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179771_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12628
Sequence Type Exemplar sequence
Representative Public ID F36G9.15 NCBI
Target Description F36G9.15 /REP_DB=WormBase Gene ID /WP=CE15992 /TR=O45468 /GB=CAB04329.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074609(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074609 NCBI Caenorhabditis elegans F36G9.15 (F36G9.15) mRNA, complete cds. 11/11 None
SNAP00000043431 ENSEMBL cdna:SNAP chromosome:CEL140:V:15990083:15990825:-1 9/11 None
GENEFINDER00000043439 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:15990083:15990579:-1 9/11 None
F36G9.15 ENSEMBL cdna:known chromosome:CEL140:V:15990083:15990606:-1 gene:F36G9.15 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:15990082-15990606(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F36G9.15
Entrez Gene 185378 Entrez gene
SwissProt O45468 EMBL-EBI
WormBase CE15992 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB04329 Hypothetical protein F36G9.15 [Caenorhabditis elegans] ref|NP_507010.1| F36G9.15 [Caenorhabditis elegans] 1.0E-44
blast CAB04329 Hypothetical protein F36G9.15 [Caenorhabditis elegans] ref|NP_507010.1| F36G9.15 [Caenorhabditis elegans] 8.0E-39
blast CAB07559 Hypothetical protein C06C6.8 [Caenorhabditis elegans] ref|NP_507014.1| C06C6.8 [Caenorhabditis elegans] 4.0E-34
blast CAB07560 Hypothetical protein C06C6.9 [Caenorhabditis elegans] ref|NP_507013.1| C06C6.9 [Caenorhabditis elegans] 2.0E-33
blast CAB07559 Hypothetical protein C06C6.8 [Caenorhabditis elegans] ref|NP_507014.1| C06C6.8 [Caenorhabditis elegans] 5.0E-32
Protein Domains
Database ID Description E-Value
Pfam IPR009564 EMBL-EBI Protein of unknown function DUF1179 2.2E-70
Pfam IPR009564 EMBL-EBI Protein of unknown function DUF1179 8.0E-65
Pfam IPR009564 EMBL-EBI Protein of unknown function DUF1179 8.0E-65
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_507010.1 1 4-26
F36G9.15 1 4-26
SNAP00000043431 1 20-39
GENEFINDER00000043439 1 15-37
Sequence
Target Sequence 
>C. ELEGANS:179771_AT
attttcagagcattactctcttgtttggaccatttcttttgctgatcgtcttcattgtaa
attgccagtcaaaaaagaagtttaaagaggatggaagagccaaactagtcccccgaaacg
caccagtttgcccggaccccgcaaaggaaaaatccgcgcagacttgtccgactgcacaga
ccccaccagcaaaaactccaatggagaggagtggaagtgcggttgaggacactcttgcaa
atgtgaaatccttaccgccggagaagtcg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATTTTCAGAGCATTACTCTCTTGTT 368 15 32 Antisense
AGCATTACTCTCTTGTTTGGACCAT 436 77 40 Antisense
TTACTCTCTTGTTTGGACCATTTCT 460 683 44 Antisense
TCTCTTGTTTGGACCATTTCTTTTG 647 611 48 Antisense
ATCGTCTTCATTGTAAATTGCCAGT 678 35 76 Antisense
GTCTTCATTGTAAATTGCCAGTCAA 418 469 79 Antisense
GATGGAAGAGCCAAACTAGTCCCCC 409 403 121 Antisense
CCCCGCAAAGGAAAAATCCGCGCAG 61 257 168 Antisense
GGAAAAATCCGCGCAGACTTGTCCG 154 527 177 Antisense
GCAAATGTGAAATCCTTACCGCCGG 276 317 268 Antisense
GAAATCCTTACCGCCGGAGAAGTCG 483 361 276 Antisense
Sequence Source Affymetrix Proprietary Database