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[179770_at]

Description C10F3.4 /REP_DB=WormBase Gene ID /WP=CE08069 /TR=O16879 /GB=AAB69886.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 17      4grp_highest_8_8 > 61      4grp_high_8_8 > 17      6grp_total > 07      4grp_total > 30      6grp_high1_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 319
1 2 3 4 range
A 540
(3)
P 		297.4
(-2.3)
P 		266.7
(-3)
P 		405.1
(0)
P 		273
B 585.2
(3)
P 		319
(-2.1)
P 		269.7
(-3)
P 		403.8
(-0.4)
P 		316
C 515
(3)
P 		360.7
(-0.9)
P 		280.6
(-3)
P 		474
(2)
P 		234
avr 546.7
(3) 		325.7
(-1.8) 		272.3
(-3) 		427.6
(0.4) 		274

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 233
1 2 3 4 5 6 range
A 459.4
(3)
P 		408
(1.5)
P 		255
(-3)
P 		279
(-2.3)
P 		286.8
(-2.1)
P 		269.8
(-2.6)
M 		204
B 405.7
(3)
P 		226
(-3)
P 		228.1
(-2.9)
P 		265.2
(-1.7)
P 		314.9
(-0)
P 		275.6
(-1.3)
P 		180
C 389.4
(3)
P 		373.9
(2.4)
P 		329.4
(0.8)
P 		330.4
(0.8)
A 		227.1
(-3)
P 		284
(-0.9)
P 		162
avr 418.2
(3) 		336
(-0.3) 		270.8
(-3) 		291.5
(-2.2) 		276.3
(-2.8) 		276.5
(-2.8) 		147
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 137
1 2 3 4 range
A 196.6
(3)
P 		64.5
(-2.8)
P 		69.7
(-2.5)
P 		59.3
(-3)
P 		137
B 186.6
(3)
P 		78.8
(-2.2)
P 		62.5
(-3)
P 		86.1
(-1.9)
P 		124
C 170.5
(3)
P 		103.7
(-1.4)
P 		97.8
(-1.8)
P 		79.9
(-3)
P 		91
avr 184.6
(3) 		82.3
(-2.6) 		76.7
(-2.9) 		75.1
(-3) 		110

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 90
1 2 3 4 5 6 range
A 84.7
(-1)
P 		145.1
(3)
P 		55.5
(-3)
P 		70.8
(-2)
P 		86.5
(-0.9)
P 		65.7
(-2.3)
M 		90
B 141.2
(3)
P 		75.2
(-1.6)
P 		55.4
(-3)
P 		70.2
(-2)
P 		127.9
(2.1)
P 		102.8
(0.3)
P 		86
C 144.3
(3)
P 		114.1
(0.7)
P 		83.8
(-1.7)
P 		66.4
(-3)
A 		73.5
(-2.5)
P 		95.1
(-0.8)
P 		78
avr 123.4
(3) 		111.5
(1.8) 		64.9
(-3) 		69.1
(-2.6) 		96
(0.2) 		87.9
(-0.6) 		59
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179770_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11662
Sequence Type Exemplar sequence
Representative Public ID C10F3.4 NCBI
Target Description C10F3.4 /REP_DB=WormBase Gene ID /WP=CE08069 /TR=O16879 /GB=AAB69886.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001028468(11), NM_001028467(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001028468 NCBI Caenorhabditis elegans C10F3.4b (C10F3.4) mRNA, complete cds. 11/11 None
NM_001028467 NCBI Caenorhabditis elegans C10F3.4a (C10F3.4) mRNA, complete cds. 11/11 None
SNAP00000029255 ENSEMBL cdna:SNAP chromosome:CEL140:V:5969072:5971695:1 11/11 None
GENEFINDER00000029261 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:5967557:5972001:1 9/11 None
C10F3.4b ENSEMBL cdna:known chromosome:CEL140:V:5964407:5971748:1 gene:C10F3.4 11/11 None
C10F3.4a ENSEMBL cdna:known chromosome:CEL140:V:5967535:5971695:1 gene:C10F3.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:5969071-5971695(+) 100.0 100.0
Public Domain and Genome References
Ensembl C10F3.4
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAV28363 Hypothetical protein C10F3.4b [Caenorhabditis elegans] ref|NP_001023639.1| C10F3.4b [Caenorhabditis elegans] 0.0
blast AAB69886 Hypothetical protein C10F3.4a [Caenorhabditis elegans] ref|NP_001023638.1| C10F3.4a [Caenorhabditis elegans] 0.0
blast CAE64535 Hypothetical protein CBG09277 [Caenorhabditis briggsae] 0.0
Sequence
Target Sequence 
>C. ELEGANS:179770_AT
gattcgaccgcctgtatggatttgccctgccatcgtttttcagctcgacagccttgacaa
ctatgagcaattcaaaatgaacatctacaaatgcgtcgaacacttaacagaatcgaatca
ggctcacaatttgttccttgccagagcacaaccaataagaacgacaggcgctgaaaaaga
agaagatcgacgaggagaacgtccccaattggtgacatgctatgtgttccctagaatgaa
catgattggtgcaaaacctccgtcgaacttcaatccagctgcaaacgagcttgctggaaa
tttgacgtcttacactattcgtttcttcgaatcggctaacgagcaatcagtgattcgaat
tattgaagaagaggcatcattagatgatgacacttttaggagtctctgcttcgacttggc
tgacgtattgataggaaggtcagtgggcacatcacgacctcaagacctggatacacttgc
gggtttgacgtcaccggaaatcgacgaacttcgcgactcattc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATTCGACCGCCTGTATGGATTTGC 335 431 735 Antisense
TTTTCAGCTCGACAGCCTTGACAAC 454 675 771 Antisense
CAGGCTCACAATTTGTTCCTTGCCA 590 209 853 Antisense
GAACGTCCCCAATTGGTGACATGCT 598 347 931 Antisense
TGCAAAACCTCCGTCGAACTTCAAT 371 575 984 Antisense
CGTCTTACACTATTCGTTTCTTCGA 251 245 1040 Antisense
GACACTTTTAGGAGTCTCTGCTTCG 204 367 1123 Antisense
TCTGCTTCGACTTGGCTGACGTATT 332 607 1139 Antisense
TCACGACCTCAAGACCTGGATACAC 224 617 1186 Antisense
GATACACTTGCGGGTTTGACGTCAC 338 423 1204 Antisense
AATCGACGAACTTCGCGACTCATTC 246 169 1233 Antisense
Sequence Source Affymetrix Proprietary Database