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[179769_at]

Description C07G1.4 /REP_DB=WormBase Gene ID /WP=CE06780 /TR=Q17795 /GB=AAB00657.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 72      6grp_high1_10_10 > 29      4grp_highest_8_8 > 0      4grp_high_8_8 > 44      6grp_highest_nonorm > 71      6grp_total > 28      4grp_total > 44      6grp_highest_sub > Cu      6grp_cgc > 05      6grp_high1_sub > Cu      6grp_cgc_sub > Cu      6grp_total_sub > Cup      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 460
1 2 3 4 range
A 414.7
(-1)
P 		654.8
(3)
P 		297
(-3)
P 		300.2
(-2.9)
P 		358
B 372.7
(1.9)
P 		411.1
(3)
P 		353.3
(1.3)
P 		201.1
(-3)
P 		210
C 404.7
(3)
P 		399.1
(2.8)
P 		367.3
(1.9)
P 		195.2
(-3)
P 		210
avr 397.4
(0.9) 		488.3
(3) 		339.2
(-0.5) 		232.2
(-3) 		256

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 267
1 2 3 4 5 6 range
A 274.7
(-2.4)
P 		430
(3)
P 		322.8
(-0.7)
P 		256.7
(-3)
P 		342.6
(-0)
P 		381.5
(1.3)
P 		173
B 475
(3)
P 		298.7
(-2.8)
P 		438.6
(1.8)
P 		291.4
(-3)
P 		299.1
(-2.7)
P 		335.7
(-1.6)
P 		184
C 477.4
(3)
P 		329.9
(-0.3)
P 		301.7
(-0.9)
P 		210.4
(-3)
P 		416.2
(1.6)
P 		326.1
(-0.4)
P 		267
avr 409
(3) 		352.9
(0.8) 		354.4
(0.9) 		252.8
(-3) 		352.6
(0.8) 		347.8
(0.6) 		156
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 118
1 2 3 4 range
A 151
(3)
P 		142.1
(2.5)
P 		77.6
(-1.1)
P 		43.9
(-3)
P 		107
B 118.9
(3)
P 		101.5
(1.6)
P 		81.9
(0.1)
P 		42.9
(-3)
P 		76
C 134
(3)
P 		114.8
(1.9)
P 		128
(2.6)
P 		32.9
(-3)
P 		101
avr 134.6
(3) 		119.5
(2) 		95.8
(0.5) 		39.9
(-3) 		95

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 135
1 2 3 4 5 6 range
A 50.6
(-3)
P 		152.9
(3)
P 		70.3
(-1.8)
P 		65.1
(-2.1)
P 		103.4
(0.1)
P 		92.9
(-0.5)
P 		102
B 165.3
(3)
P 		99.4
(-1.5)
P 		106.5
(-1)
P 		77.2
(-3)
P 		121.5
(0)
P 		125.2
(0.3)
P 		88
C 176.9
(3)
P 		100.7
(-0.4)
P 		76.8
(-1.5)
P 		42.3
(-3)
P 		134.7
(1.1)
P 		109.2
(-0)
P 		135
avr 130.9
(3) 		117.7
(1.9) 		84.5
(-1) 		61.5
(-3) 		119.9
(2) 		109.1
(1.1) 		69
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179769_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8541
Sequence Type Exemplar sequence
Representative Public ID C07G1.4 NCBI
Target Description C07G1.4 /REP_DB=WormBase Gene ID /WP=CE06780 /TR=Q17795 /GB=AAB00657.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_171393(11), NM_171394(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_171393 NCBI Caenorhabditis elegans WASP (actin cytoskeleton modulator) homolog family member (wsp-1) (wsp-1) mRNA, complete cds. 11/11 None
NM_171394 NCBI Caenorhabditis elegans WASP (actin cytoskeleton modulator) homolog family member (wsp-1) (wsp-1) mRNA, complete cds. 11/11 None
SNAP00000020459 ENSEMBL cdna:SNAP chromosome:CEL140:IV:8189327:8191727:-1 11/11 None
GENEFINDER00000020476 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:8189327:8191559:-1 11/11 None
C07G1.4a ENSEMBL cdna:known chromosome:CEL140:IV:8188888:8198932:-1 gene:C07G1.4 11/11 A 
C07G1.4b ENSEMBL cdna:known chromosome:CEL140:IV:8189327:8193133:-1 gene:C07G1.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:8189155-8198593(-) 91.86 100.0
Public Domain and Genome References
Ensembl C07G1.4
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAN84881 Wasp (actin cytoskeleton modulator) homolog protein 1, isoform a [Caenorhabditis elegans] ref|NP_741459.2| WASP (actin cytoskeleton modulator) homolog family member (wsp-1) [Caenorhabditis elegans] 0.0
blast AAN84882 Wasp (actin cytoskeleton modulator) homolog protein 1, isoform b [Caenorhabditis elegans] ref|NP_741460.2| WASP (actin cytoskeleton modulator) homolog family member (wsp-1) [Caenorhabditis elegans] 0.0
blast T15446 hypothetical protein C07G1.4 - Caenorhabditis elegans 0.0
blast CAE58429 Hypothetical protein CBG01563 [Caenorhabditis briggsae] 1.0E-156
blast AAN84882 Wasp (actin cytoskeleton modulator) homolog protein 1, isoform b [Caenorhabditis elegans] ref|NP_741460.2| WASP (actin cytoskeleton modulator) homolog family member (wsp-1) [Caenorhabditis elegans] 1.0E-125
Protein Domains
Database ID Description E-Value
Pfam IPR001960 EMBL-EBI WH1 7.0E-10
Pfam IPR003124 EMBL-EBI Actin-binding WH2 2.9E-6
Pfam IPR003124 EMBL-EBI Actin-binding WH2 7.4E-7
Pfam IPR000095 EMBL-EBI PAK-box/P21-Rho-binding 6.2E-17
Pfam IPR003124 EMBL-EBI Actin-binding WH2 2.9E-6
Pfam IPR003124 EMBL-EBI Actin-binding WH2 7.4E-7
Pfam IPR000095 EMBL-EBI PAK-box/P21-Rho-binding 6.2E-17
Pfam IPR003124 EMBL-EBI Actin-binding WH2 2.9E-6
Pfam IPR003124 EMBL-EBI Actin-binding WH2 7.4E-7
Pfam IPR000095 EMBL-EBI PAK-box/P21-Rho-binding 6.2E-17
Pfam IPR003124 EMBL-EBI Actin-binding WH2 2.9E-6
Pfam IPR003124 EMBL-EBI Actin-binding WH2 7.4E-7
Pfam IPR000095 EMBL-EBI PAK-box/P21-Rho-binding 6.2E-17
Sequence
Target Sequence 
>C. ELEGANS:179769_AT
agagaatcgaccacatgcggttccaccacctccaccccctccaccaccacaatcatttgg
aatggctccgatatcatccgcagctcctccaccaccacctcctccaccaccgatgggatt
gccagcagtaggagcaggagctccaccccctccacctccaccaccaccttcaggagccgg
aggacctgcatcggtgctcgcaaaactaccacctgctcaggatggaagatcgaatttgct
agcggaaatccaagctggaaaacaacttcgatccgttcaacaaactgcagattcaccaaa
atcggctggtggtgatgctcgtggagatgtgatggcccaaattcgacaaggagcacaatt
aaaacatgtggatgcagctgctgagcaagaacgtcgaaagagtacgacttctggagccgc
tggaatgggaggattggctggagcactagcaaaggctcttgaggaacgtcgaatga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGAGAATCGACCACATGCGGTTCCA 538 69 2298 Antisense
TTTGGAATGGCTCCGATATCATCCG 245 667 2353 Antisense
ACCACCGATGGGATTGCCAGCAGTA 536 83 2403 Antisense
TGCATCGGTGCTCGCAAAACTACCA 95 577 2484 Antisense
AAAACTACCACCTGCTCAGGATGGA 153 131 2499 Antisense
AACTTCGATCCGTTCAACAAACTGC 413 139 2561 Antisense
AAAATCGGCTGGTGGTGATGCTCGT 390 133 2595 Antisense
GATGGCCCAAATTCGACAAGGAGCA 364 405 2628 Antisense
AAAGAGTACGACTTCTGGAGCCGCT 141 123 2694 Antisense
GGGAGGATTGGCTGGAGCACTAGCA 700 495 2724 Antisense
AAGGCTCTTGAGGAACGTCGAATGA 445 161 2749 Antisense
Sequence Source Affymetrix Proprietary Database