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[179766_s_at]

Description C09E7.6 /REP_DB=WormBase Gene ID /WP=CE25770 /TR=Q9N5Y8 /GB=AAF60369.2 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 79      6grp_high1_10_10 > 97      4grp_highest_8_8 > 44      4grp_high_8_8 > 08      6grp_highest_nonorm > 92      6grp_total > 96      4grp_total > 31      6grp_highest_sub > In      6grp_high1_sub > In      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 246
1 2 3 4 range
A 310.3
(3)
P 		63.9
(-3)
P 		149.8
(-0.9)
P 		202
(0.4)
P 		246
B 272.5
(3)
P 		112.4
(-2.6)
P 		99.6
(-3)
P 		212.9
(0.9)
P 		173
C 260.6
(3)
P 		125.8
(-3)
P 		131.6
(-2.7)
P 		205.3
(0.5)
P 		135
avr 281.1
(3) 		100.7
(-3) 		127
(-2.1) 		206.7
(0.5) 		180

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 264
1 2 3 4 5 6 range
A 215.2
(-2.5)
P 		322.1
(0.7)
P 		198.5
(-3)
P 		363.6
(1.9)
P 		331.2
(1)
P 		398.9
(3)
P 		200
B 219
(-3)
P 		226.1
(-2.8)
P 		358.1
(0.4)
P 		287.8
(-1.3)
P 		462.4
(3)
P 		447.4
(2.6)
P 		243
C 264
(-3)
P 		285
(-2.3)
P 		336.8
(-0.7)
P 		299.4
(-1.9)
P 		328.9
(-0.9)
P 		453.5
(3)
P 		190
avr 232.7
(-3) 		277.7
(-1.7) 		297.8
(-1.1) 		316.9
(-0.5) 		374.2
(1.2) 		433.3
(3) 		201
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 99
1 2 3 4 range
A 113
(3)
P 		13.9
(-3)
P 		39.2
(-1.5)
P 		29.6
(-2)
P 		99
B 86.9
(3)
P 		27.8
(-2.6)
P 		23.1
(-3)
P 		45.4
(-0.9)
P 		64
C 86.3
(3)
P 		36.2
(-2.8)
P 		45.9
(-1.7)
P 		34.6
(-3)
P 		52
avr 95.4
(3) 		26
(-3) 		36.1
(-2.1) 		36.5
(-2.1) 		69

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 148
1 2 3 4 5 6 range
A 39.7
(-3)
P 		114.6
(3)
P 		43.2
(-2.7)
P 		92.2
(1.2)
P 		99.9
(1.8)
P 		97.1
(1.6)
P 		75
B 76.2
(-3)
P 		75.3
(-3)
P 		87
(-2.4)
P 		76.2
(-3)
P 		187.9
(3)
P 		166.8
(1.9)
P 		113
C 97.8
(-0.5)
P 		87
(-1.2)
P 		85.7
(-1.3)
P 		60.2
(-3)
P 		106.4
(0)
P 		151.8
(3)
P 		92
avr 71.2
(-3) 		92.3
(-1.1) 		72
(-2.9) 		76.2
(-2.6) 		131.4
(2.4) 		138.6
(3) 		67
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 179766_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6073
Sequence Type Exemplar sequence
Representative Public ID C09E7.6 NCBI
Target Description C09E7.6 /REP_DB=WormBase Gene ID /WP=CE25770 /TR=Q9N5Y8 /GB=AAF60369.2 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066043(11), NM_066046(11), NM_181966(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066043 NCBI Caenorhabditis elegans C09E7.9 (C09E7.9) mRNA, complete cds. 11/11 A 
NM_066046 NCBI Caenorhabditis elegans C09E7.8a (C09E7.8) mRNA, complete cds. 11/11 A 
NM_181966 NCBI Caenorhabditis elegans C09E7.8b (C09E7.8) mRNA, complete cds. 11/11 A 
SNAP00000042848 ENSEMBL cdna:SNAP chromosome:CEL140:III:6541573:6546155:-1 11/11 None
GENEFINDER00000042853 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:6541573:6551164:-1 11/11 None
C09E7.9 ENSEMBL cdna:known chromosome:CEL140:III:6541543:6545108:-1 gene:C09E7.9 11/11 A 
C09E7.8a ENSEMBL cdna:known chromosome:CEL140:III:6553510:6558510:-1 gene:C09E7.8 11/11 A 
C09E7.8b ENSEMBL cdna:known chromosome:CEL140:III:6553635:6558394:-1 gene:C09E7.8 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:6541571-6546154(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C09E7.9
C09E7.8
Entrez Gene 3565844 Entrez gene
SwissProt Q95YE3 EMBL-EBI
WormBase CE29078 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAL00855 Hypothetical protein C09E7.9 [Caenorhabditis elegans] ref|NP_498444.1| C09E7.9 [Caenorhabditis elegans] 0.0
blast AAN63459 Hypothetical protein C09E7.8b [Caenorhabditis elegans] ref|NP_871695.1| C09E7.8b [Caenorhabditis elegans] 0.0
blast AAN63458 Hypothetical protein C09E7.8a [Caenorhabditis elegans] ref|NP_498447.2| C09E7.8a [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR001841 EMBL-EBI Zn-finger, RING 8.5E-10
Pfam IPR001841 EMBL-EBI Zn-finger, RING 8.5E-10
Pfam IPR001841 EMBL-EBI Zn-finger, RING 8.5E-10
Pfam IPR001841 EMBL-EBI Zn-finger, RING 3.4E-10
Pfam IPR001841 EMBL-EBI Zn-finger, RING 3.4E-10
Sequence
Target Sequence 
>C. ELEGANS:179766_S_AT
agattctacagaaatgcgacgggaaaacaacctttgacgtcttcaagttcttcatctgca
aaccctcgttccacacatattgaaggttcttcgatttctacaatgccatcaacttcatct
cgcggaaatgttcaacaccactctggatctgctgttagaggacaatcaattactcccact
ggattatctcaagttccaatgagtccgagaaaactgtttagtcagcc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGATTCTACAGAAATGCGACGGGAA 580 65 2563 Antisense
GGTTCTTCGATTTCTACAATGCCAT 263 507 2647 Antisense
TCGATTTCTACAATGCCATCAACTT 385 603 2653 Antisense
TCAACTTCATCTCGCGGAAATGTTC 190 631 2671 Antisense
GAAATGTTCAACACCACTCTGGATC 404 361 2687 Antisense
TTCAACACCACTCTGGATCTGCTGT 577 685 2693 Antisense
CTGGATCTGCTGTTAGAGGACAATC 320 241 2705 Antisense
GAGGACAATCAATTACTCCCACTGG 674 403 2720 Antisense
CAATTACTCCCACTGGATTATCTCA 183 181 2729 Antisense
CAAGTTCCAATGAGTCCGAGAAAAC 439 183 2752 Antisense
GTCCGAGAAAACTGTTTAGTCAGCC 513 291 2765 Antisense
Sequence Source Affymetrix Proprietary Database